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LOCUS	    HM593177		    1736 bp    DNA     linear	VRL 21-JUL-2010
DEFINITION  HIV-1 isolate SK17 from South Africa gag protein (gag) gene,
	    complete cds; and pol protein (pol) gene, partial cds
ACCESSION   HM593177
VERSION     HM593177.1 GI:300719930
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1736)
            Show all sequences for reference 1
  AUTHORS   Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
	    Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
	    Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
	    Brockman,M.A. and Ndung'u,T.
  TITLE     Gag-protease-mediated replication capacity in HIV-1 subtype C
	    chronic infection: associations with HLA type and clinical
	    parameters.
  JOURNAL   J. Virol.. 84(20); 10820-31 (2010)
  PUBMED    20702636
REFERENCE   2 (bases 1 to 1736)
            Show all sequences for reference 2
  AUTHORS   Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
	    Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
	    Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
	    Brockman,M.A. and Ndung'u,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2010) HIV Pathogenesis Programme, University of
	    KwaZulu Natal, 719 Umbilo Road, Durban, KwaZulu Natal 4001, South
	    Africa
FEATURES             Location/Qualifiers
     source	     1..1736
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="SK17"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="18-Apr-2006"
     gene	     1..1479
		     /gene="gag"
     CDS	     1..1479
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ADK32926.1"
		     /db_xref="GI:300719931"
		     /translation="MGARASXLRGEKLDKWERIRLRPGGKKHYMLKHIVWASRELEXF
		     ALNPGLLESAEGCRQIMQQLQPALQTGTEELKSLYNTVATLYCVHXXIDVKDTKEALD
		     KIEEEQNKSQQKTQQAKAADGKVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKA
		     FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRVHPVHAG
		     PXAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPVPVGEIYKRWIILGLNKIVRMYSP
		     VSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRAL
		     GPXAXLEEMMTACQGVGGPGHKARVLAEAMSQVNNGNIMMQRSNFKGXKRTVKCFNCG
		     KEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGRIWPSHKGRPGNFLQNRPE
		     PSAPPAESFXFEDTPTPKQEPKDREXHLASLKSLFGXDPLSQ"
     gene	     <1284..>1736
		     /gene="pol"
     CDS	     <1284..>1736
		     /gene="pol"
		     /note="contains protease"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADK32927.1"
		     /db_xref="GI:300719932"
		     /translation="FFRENLAFPQGXAXEXPSEQTRAISPTSRELQXRGHSHSEAGAE
		     GQGXTFSFPQITLWQRPLVSIKVGGQVKEALLDTGADDTVLEDIDLPGKWKPKMIGGI
		     GGFIKVRQYDQIPIEICGKRAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT	631 a	 310 c	  411 g    348 t     36 other
ORIGIN
       1 atgggtgcga gagcgtcart attamgaggc gaaaaattag ataaatggga aagaattagg 
      61 ytaaggccag ggggaaagaa acattatatg ttaaaacaca tagtatgggc aagcagggag 
     121 ctggaaarat ttgcacttaa ccctggyctt ttagaatcag cagaaggctg tagrcaaata 
     181 atgcaacagc tacaaccagc tctycagaca ggaacagagg aacttaaatc attatataac 
     241 acagtagcaa ctctttattg tgtacatsma argatagatg taaaagacac caaggaagct 
     301 ttagacaaga tagaggarga acaaaacaar agtcagcaaa aaacacagca rgcaaaagcg 
     361 gctgacggaa aggtcagtca aaattatcct atagtgcaaa atcttcaagg gcaaatggta 
     421 catcaagcca tatcacctag aaccttgaat gcatgggtaa aagtcataga ggaraaggct 
     481 ttcagtccag aggtgatacc catgtttaca gcattatcag aaggagccac yccacaagat 
     541 ttaaacacca tgttaaatac agtgggggga catcaagcag ccatgcaaat gttaaaagat 
     601 accatcaatg aggaggctgc agaatgggat agagtacayc cagtacatgc agggcctrtd 
     661 gcaccaggyc aaatgaggga accaagggga agtgacatag caggaactac tagtaccctt 
     721 caggaacaaa tagcatggat gacaagtaac ccacctgtyc cagtgggaga aatctataaa 
     781 agatggataa ttctggggct aaataaaata gtgagaatgt atagccctgt cagcattttg 
     841 gacataagac aagggccaaa ggaacccttt agagactatg tagatcggtt ctttaaaact 
     901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagacac cttgttggtc 
     961 caaaatgcga acccagattg taagaccatt ttaagagcat taggrccags ggccwcatta 
    1021 gaagaaatga tgacagcatg tcagggagtg ggaggacctg gccacaaagc aagagtgtta 
    1081 gctgaggcaa tgagccaagt aaacaatgga aacataatga tgcagagaag caattttaaa 
    1141 ggcyctaaaa gaactgttaa atgyttcaac tgtggcaagg aaggrcacat agccagaaac 
    1201 tgcagggccc ctagraaaaa rggctgttgg aaatgtggaa aggaaggaca ccaaatgaaa 
    1261 gaatgtactg agaggcaggc taatttttta gggagaattt ggccttccca caagggragg 
    1321 ccrgggaayt tccttcagaa cagaccagag ccatcagccc caccagcaga gagcttcark 
    1381 ttcgaggaca ctcccactcc gaagcaggag ccgaaggaca gggaaycaca tttagcttcc 
    1441 ctcaaatcac tctttggcar cgaccccttg tctcaataaa agtagggggt caggtaaaag 
    1501 aggctctctt agacacagga gcagatgata cagtattaga agacatagat ttgccaggaa 
    1561 aatggaaacc aaaaatgata ggaggaattg gaggttttat caaagtaaga cagtatgatc 
    1621 aaatacctat agaaatttgt ggaaaaagag ctattggtac agtattagta ggrcctacac 
    1681 ctgtcaacat aattggaaga aatatgttga ctcagcttgg atgcacacta aatttt
//
last modified: Tue May 31 10:56 2022


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