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LOCUS HM593177 1736 bp DNA linear VRL 21-JUL-2010
DEFINITION HIV-1 isolate SK17 from South Africa gag protein (gag) gene,
complete cds; and pol protein (pol) gene, partial cds
ACCESSION HM593177
VERSION HM593177.1 GI:300719930
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1736)
Show all sequences for reference 1
AUTHORS Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
Brockman,M.A. and Ndung'u,T.
TITLE Gag-protease-mediated replication capacity in HIV-1 subtype C
chronic infection: associations with HLA type and clinical
parameters.
JOURNAL J. Virol.. 84(20); 10820-31 (2010)
PUBMED 20702636
REFERENCE 2 (bases 1 to 1736)
Show all sequences for reference 2
AUTHORS Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
Brockman,M.A. and Ndung'u,T.
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2010) HIV Pathogenesis Programme, University of
KwaZulu Natal, 719 Umbilo Road, Durban, KwaZulu Natal 4001, South
Africa
FEATURES Location/Qualifiers
source 1..1736
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="SK17"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="18-Apr-2006"
gene 1..1479
/gene="gag"
CDS 1..1479
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ADK32926.1"
/db_xref="GI:300719931"
/translation="MGARASXLRGEKLDKWERIRLRPGGKKHYMLKHIVWASRELEXF
ALNPGLLESAEGCRQIMQQLQPALQTGTEELKSLYNTVATLYCVHXXIDVKDTKEALD
KIEEEQNKSQQKTQQAKAADGKVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKA
FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRVHPVHAG
PXAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPVPVGEIYKRWIILGLNKIVRMYSP
VSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRAL
GPXAXLEEMMTACQGVGGPGHKARVLAEAMSQVNNGNIMMQRSNFKGXKRTVKCFNCG
KEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGRIWPSHKGRPGNFLQNRPE
PSAPPAESFXFEDTPTPKQEPKDREXHLASLKSLFGXDPLSQ"
gene <1284..>1736
/gene="pol"
CDS <1284..>1736
/gene="pol"
/note="contains protease"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADK32927.1"
/db_xref="GI:300719932"
/translation="FFRENLAFPQGXAXEXPSEQTRAISPTSRELQXRGHSHSEAGAE
GQGXTFSFPQITLWQRPLVSIKVGGQVKEALLDTGADDTVLEDIDLPGKWKPKMIGGI
GGFIKVRQYDQIPIEICGKRAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT 631 a 310 c 411 g 348 t 36 other
ORIGIN
1 atgggtgcga gagcgtcart attamgaggc gaaaaattag ataaatggga aagaattagg
61 ytaaggccag ggggaaagaa acattatatg ttaaaacaca tagtatgggc aagcagggag
121 ctggaaarat ttgcacttaa ccctggyctt ttagaatcag cagaaggctg tagrcaaata
181 atgcaacagc tacaaccagc tctycagaca ggaacagagg aacttaaatc attatataac
241 acagtagcaa ctctttattg tgtacatsma argatagatg taaaagacac caaggaagct
301 ttagacaaga tagaggarga acaaaacaar agtcagcaaa aaacacagca rgcaaaagcg
361 gctgacggaa aggtcagtca aaattatcct atagtgcaaa atcttcaagg gcaaatggta
421 catcaagcca tatcacctag aaccttgaat gcatgggtaa aagtcataga ggaraaggct
481 ttcagtccag aggtgatacc catgtttaca gcattatcag aaggagccac yccacaagat
541 ttaaacacca tgttaaatac agtgggggga catcaagcag ccatgcaaat gttaaaagat
601 accatcaatg aggaggctgc agaatgggat agagtacayc cagtacatgc agggcctrtd
661 gcaccaggyc aaatgaggga accaagggga agtgacatag caggaactac tagtaccctt
721 caggaacaaa tagcatggat gacaagtaac ccacctgtyc cagtgggaga aatctataaa
781 agatggataa ttctggggct aaataaaata gtgagaatgt atagccctgt cagcattttg
841 gacataagac aagggccaaa ggaacccttt agagactatg tagatcggtt ctttaaaact
901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagacac cttgttggtc
961 caaaatgcga acccagattg taagaccatt ttaagagcat taggrccags ggccwcatta
1021 gaagaaatga tgacagcatg tcagggagtg ggaggacctg gccacaaagc aagagtgtta
1081 gctgaggcaa tgagccaagt aaacaatgga aacataatga tgcagagaag caattttaaa
1141 ggcyctaaaa gaactgttaa atgyttcaac tgtggcaagg aaggrcacat agccagaaac
1201 tgcagggccc ctagraaaaa rggctgttgg aaatgtggaa aggaaggaca ccaaatgaaa
1261 gaatgtactg agaggcaggc taatttttta gggagaattt ggccttccca caagggragg
1321 ccrgggaayt tccttcagaa cagaccagag ccatcagccc caccagcaga gagcttcark
1381 ttcgaggaca ctcccactcc gaagcaggag ccgaaggaca gggaaycaca tttagcttcc
1441 ctcaaatcac tctttggcar cgaccccttg tctcaataaa agtagggggt caggtaaaag
1501 aggctctctt agacacagga gcagatgata cagtattaga agacatagat ttgccaggaa
1561 aatggaaacc aaaaatgata ggaggaattg gaggttttat caaagtaaga cagtatgatc
1621 aaatacctat agaaatttgt ggaaaaagag ctattggtac agtattagta ggrcctacac
1681 ctgtcaacat aattggaaga aatatgttga ctcagcttgg atgcacacta aatttt
//
last modified: Tue May 31 10:56 2022