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LOCUS	    HM593116		    1754 bp    DNA     linear	VRL 21-JUL-2010
DEFINITION  HIV-1 isolate SK11 from South Africa gag protein (gag) gene,
	    complete cds; and pol protein (pol) gene, partial cds
ACCESSION   HM593116
VERSION     HM593116.1 GI:300719747
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1754)
            Show all sequences for reference 1
  AUTHORS   Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
	    Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
	    Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
	    Brockman,M.A. and Ndung'u,T.
  TITLE     Gag-protease-mediated replication capacity in HIV-1 subtype C
	    chronic infection: associations with HLA type and clinical
	    parameters.
  JOURNAL   J. Virol.. 84(20); 10820-31 (2010)
  PUBMED    20702636
REFERENCE   2 (bases 1 to 1754)
            Show all sequences for reference 2
  AUTHORS   Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
	    Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
	    Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
	    Brockman,M.A. and Ndung'u,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2010) HIV Pathogenesis Programme, University of
	    KwaZulu Natal, 719 Umbilo Road, Durban, KwaZulu Natal 4001, South
	    Africa
FEATURES             Location/Qualifiers
     source	     1..1754
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="SK11"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="18-Nov-2003"
     gene	     1..1497
		     /gene="gag"
     CDS	     1..1497
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ADK32804.1"
		     /db_xref="GI:300719748"
		     /translation="MGARASVLRGEKLDKWEKIRLRPGGKKKYMIKHIVWASRELERF
		     ALNPGLLETXEGCKQIXQQLQPALKTGTEELRSLYNTVATLYCVHARIEVRDTKEALD
		     KIEEEQNKSQQKTQQAKPXDGKXSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKA
		     FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINDEAAEWDRLHPVHAG
		     PIAPGQMREPRGSDIAGTTSNLQEQIAWMTGNPPVPVGEIYKRWIILGLNKIVRMYSP
		     VSILDIRQGPKEPFRDYVDRFFKTLRAEQASQDVKNWMTDTLLVQNANPDCKTILRAL
		     GPGATLEEMMTACQGVGGPGHKARVLAEAMSQANNINIMMQRNNFKGSKRIVKCFNCG
		     KEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNRPE
		     PTAPPEPTAPPAESFRFGEXTPXPKQEQKDREPLISLKSLFGSDPXSQ"
     gene	     <1284..>1754
		     /gene="pol"
     CDS	     <1284..>1754
		     /gene="pol"
		     /note="contains protease"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADK32805.1"
		     /db_xref="GI:300719749"
		     /translation="FFRENLAFPQGEAREFPXEQTRANSPTRAXSPXSRELQVRGXNP
		     XXEAGAERQGTXNXPQITLWQRPLVTIKVGGQXKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGXFIKVRQYDQIXIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT	645 a	 316 c	  412 g    341 t     40 other
ORIGIN
       1 atgggtgcga gagcgtcagt attaagaggc gaaaaattag ataaatggga aaaaattagg 
      61 ttaaggccag ggggaaagaa aaagtatatg ataaaacaca tagtatgggc aagcagggag 
     121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacak cagaaggctg taagcaaata 
     181 mtrcaacagc tacaaccagc tcttaagaca ggaacagagg aacttagatc attatataac 
     241 acagtagcaa ctctctattg tgtacatgca aggatagagg tacgagacac caaggaagcc 
     301 ttagacaaga tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggcaaaaccg 
     361 gytgayggaa agrtcagtca aaattatcct atagtrcaga atctccaagg gcaaatggta 
     421 catcaagcca tatcacctag aaccttgaat gcatgggtra aggtaataga rgaraaggct 
     481 tttagcccag argtaatacc catgtttaca gcattatcag aaggagccac cccacaagat 
     541 ttaaacacca tgttaaatac ggtgggggga catcaagcag ccatgcaaat gttaaaagat 
     601 accatcaatg aygaggctgc agaatgggat agattacayc cagtacatgc rgggcctatt 
     661 gcaccaggcc aaatgagaga accaagggga agtgacatag caggaactac tagtaacctt 
     721 caggaacaaa tagcatggat gacaggtaac ccacctgttc ctgtgggaga aatctataaa 
     781 agatggataa ttctggggtt aaataaaata gtgagaatgt atagccctgt cagcattttg 
     841 gacataagac aaggrccaaa ggaacccttt agagactatg tagaccggtt ctttaaaact 
     901 ttaagagcyg aacaagcttc acaagatgta aaaaattgga tgacagatac cttgttggtc 
     961 caaaatgcga acccagattg taagaccatt ttaagagcat taggaccagg ggctacatta 
    1021 gaagaaatga tgacagcatg tcagggagtr ggaggacctg gccacaaagc aagagtgttg 
    1081 gctgaggcga tgagccaagc maacaatata aacataatga tgcagagaaa caattttaaa 
    1141 ggctctaaaa gaattgttaa atgtttyaac tgtggcaagg aagggcacat agccagaaat 
    1201 tgcagagcyc ctaggaaaaa aggctgttgg aaatgtggaa aggaaggaca ccaaatgaaa 
    1261 gactgtactg agagrcaggc taatttttta gggaaaattt ggccttccca caaggggagg 
    1321 ccagggaatt tcctycagaa cagaccagag ccaacagccc caccagagcc wacagccccd 
    1381 ccagcagaga gcttcaggtt cggggagrca accccyrcyc cgaagcagga gcagaaagac 
    1441 agggaaccyt taatytccct caaatcactc tttggcagcg acccctkgtc acaataaaag 
    1501 taggrggcca gayaaargag gctctyytag acacaggagc agatgataca gtattagaag 
    1561 aaataaattt gccaggaaaa tggaaaccaa aaatgatagg aggaattgga rgttttatca 
    1621 aagtaagaca gtatgatcaa atacycatag aaatttgtgg aaaaaaggct ataggtacag 
    1681 tattagtagg rcctacacct gtcaacataa ttggamgaaa catgttgact cagcttggat 
    1741 gcacactaaa tttt
//
last modified: Tue May 31 10:56 2022


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