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LOCUS HM593116 1754 bp DNA linear VRL 21-JUL-2010
DEFINITION HIV-1 isolate SK11 from South Africa gag protein (gag) gene,
complete cds; and pol protein (pol) gene, partial cds
ACCESSION HM593116
VERSION HM593116.1 GI:300719747
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1754)
Show all sequences for reference 1
AUTHORS Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
Brockman,M.A. and Ndung'u,T.
TITLE Gag-protease-mediated replication capacity in HIV-1 subtype C
chronic infection: associations with HLA type and clinical
parameters.
JOURNAL J. Virol.. 84(20); 10820-31 (2010)
PUBMED 20702636
REFERENCE 2 (bases 1 to 1754)
Show all sequences for reference 2
AUTHORS Wright,J.K., Brumme,Z.L., Carlson,J.M., Heckerman,D., Kadie,C.M.,
Brumme,C.J., Wang,B., Losina,E., Miura,T., Chonco,F., van der
Stok,M., Mncube,Z., Bishop,K., Goulder,P.J.R., Walker,B.D.,
Brockman,M.A. and Ndung'u,T.
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2010) HIV Pathogenesis Programme, University of
KwaZulu Natal, 719 Umbilo Road, Durban, KwaZulu Natal 4001, South
Africa
FEATURES Location/Qualifiers
source 1..1754
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="SK11"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="18-Nov-2003"
gene 1..1497
/gene="gag"
CDS 1..1497
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ADK32804.1"
/db_xref="GI:300719748"
/translation="MGARASVLRGEKLDKWEKIRLRPGGKKKYMIKHIVWASRELERF
ALNPGLLETXEGCKQIXQQLQPALKTGTEELRSLYNTVATLYCVHARIEVRDTKEALD
KIEEEQNKSQQKTQQAKPXDGKXSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKA
FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINDEAAEWDRLHPVHAG
PIAPGQMREPRGSDIAGTTSNLQEQIAWMTGNPPVPVGEIYKRWIILGLNKIVRMYSP
VSILDIRQGPKEPFRDYVDRFFKTLRAEQASQDVKNWMTDTLLVQNANPDCKTILRAL
GPGATLEEMMTACQGVGGPGHKARVLAEAMSQANNINIMMQRNNFKGSKRIVKCFNCG
KEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNRPE
PTAPPEPTAPPAESFRFGEXTPXPKQEQKDREPLISLKSLFGSDPXSQ"
gene <1284..>1754
/gene="pol"
CDS <1284..>1754
/gene="pol"
/note="contains protease"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADK32805.1"
/db_xref="GI:300719749"
/translation="FFRENLAFPQGEAREFPXEQTRANSPTRAXSPXSRELQVRGXNP
XXEAGAERQGTXNXPQITLWQRPLVTIKVGGQXKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGXFIKVRQYDQIXIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT 645 a 316 c 412 g 341 t 40 other
ORIGIN
1 atgggtgcga gagcgtcagt attaagaggc gaaaaattag ataaatggga aaaaattagg
61 ttaaggccag ggggaaagaa aaagtatatg ataaaacaca tagtatgggc aagcagggag
121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacak cagaaggctg taagcaaata
181 mtrcaacagc tacaaccagc tcttaagaca ggaacagagg aacttagatc attatataac
241 acagtagcaa ctctctattg tgtacatgca aggatagagg tacgagacac caaggaagcc
301 ttagacaaga tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggcaaaaccg
361 gytgayggaa agrtcagtca aaattatcct atagtrcaga atctccaagg gcaaatggta
421 catcaagcca tatcacctag aaccttgaat gcatgggtra aggtaataga rgaraaggct
481 tttagcccag argtaatacc catgtttaca gcattatcag aaggagccac cccacaagat
541 ttaaacacca tgttaaatac ggtgggggga catcaagcag ccatgcaaat gttaaaagat
601 accatcaatg aygaggctgc agaatgggat agattacayc cagtacatgc rgggcctatt
661 gcaccaggcc aaatgagaga accaagggga agtgacatag caggaactac tagtaacctt
721 caggaacaaa tagcatggat gacaggtaac ccacctgttc ctgtgggaga aatctataaa
781 agatggataa ttctggggtt aaataaaata gtgagaatgt atagccctgt cagcattttg
841 gacataagac aaggrccaaa ggaacccttt agagactatg tagaccggtt ctttaaaact
901 ttaagagcyg aacaagcttc acaagatgta aaaaattgga tgacagatac cttgttggtc
961 caaaatgcga acccagattg taagaccatt ttaagagcat taggaccagg ggctacatta
1021 gaagaaatga tgacagcatg tcagggagtr ggaggacctg gccacaaagc aagagtgttg
1081 gctgaggcga tgagccaagc maacaatata aacataatga tgcagagaaa caattttaaa
1141 ggctctaaaa gaattgttaa atgtttyaac tgtggcaagg aagggcacat agccagaaat
1201 tgcagagcyc ctaggaaaaa aggctgttgg aaatgtggaa aggaaggaca ccaaatgaaa
1261 gactgtactg agagrcaggc taatttttta gggaaaattt ggccttccca caaggggagg
1321 ccagggaatt tcctycagaa cagaccagag ccaacagccc caccagagcc wacagccccd
1381 ccagcagaga gcttcaggtt cggggagrca accccyrcyc cgaagcagga gcagaaagac
1441 agggaaccyt taatytccct caaatcactc tttggcagcg acccctkgtc acaataaaag
1501 taggrggcca gayaaargag gctctyytag acacaggagc agatgataca gtattagaag
1561 aaataaattt gccaggaaaa tggaaaccaa aaatgatagg aggaattgga rgttttatca
1621 aagtaagaca gtatgatcaa atacycatag aaatttgtgg aaaaaaggct ataggtacag
1681 tattagtagg rcctacacct gtcaacataa ttggamgaaa catgttgact cagcttggat
1741 gcacactaaa tttt
//
last modified: Tue May 31 10:56 2022