HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    HM363414		     627 bp    DNA     linear	VRL 28-SEP-2010
DEFINITION  Simian immunodeficiency virus strain SIVreg-REG049-Bioko pol
	    protein (pol) gene, partial cds
ACCESSION   HM363414
VERSION     HM363414.1 GI:307377418
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 627)
            Show all sequences for reference 1
  AUTHORS   Worobey,M., Telfer,P., Souquiere,S., Hunter,M., Coleman,C.A.,
	    Metzger,M.J., Reed,P., Makuwa,M., Hearn,G., Honarvar,S., Roques,P.,
	    Apetrei,C., Kazanji,M. and Marx,P.A.
  TITLE     Island biogeography reveals the deep history of SIV
  JOURNAL   Science 329 (5998), 1487 (2010)
  PUBMED    20847261
REFERENCE   2 (bases 1 to 627)
            Show all sequences for reference 2
  AUTHORS   Worobey,M. and Marx,P.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2010) Ecology and Evolutionary Biology,
	    University of Arizona, 1041 E Lowell, Tucson, AZ 85721, USA
FEATURES             Location/Qualifiers
     source	     1..627
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /strain="SIVreg-REG049-Bioko"
		     /db_xref="taxon:11723"
		     /country="Equatorial Guinea: Bioko"
		     /collection_date="12-May-2001"
     gene	     <1..>627
		     /gene="pol"
     CDS	     <1..>627
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADN44044.1"
		     /db_xref="GI:307377419"
		     /translation="GIGGNHEVDQLVSKGIRQVLFMEQVELAREDHERYHSNWKFLRD
		     TYQIPTIVAKEIVNHCPKCQTQGEPKRGQVNTELGLWQMDCTHMEGKVILVAANPASG
		     YIWAKLIKRETGLETALALLQLAATWPISHIHTDNGPNFTSREFQAAAWWANIEHSTG
		     IPYNPQSQGVVENMNKLLKKIIGKIREEVEYLETAVAQACFILNFKRKG"
BASE COUNT	236 a	 123 c	  155 g    113 t
ORIGIN
       1 ggtataggag gaaatcatga agtagaccaa ttagtaagca aggggataag acaagtcctc 
      61 ttcatggaac aagttgagct agccagagaa gatcatgaga gataccacag taattggaaa 
     121 ttcttaaggg acacatatca gataccaacc atagtggcaa aagagatagt aaatcactgc 
     181 ccaaaatgcc agacccaagg agagcccaag agaggacaag tgaacacaga attagggctg 
     241 tggcagatgg actgcaccca catggaaggc aaagtcatct tagtggcggc aaatcccgct 
     301 agtggataca tatgggctaa gctaataaag agagaaacag gcctggagac ggctttagcc 
     361 ttgttgcaat tggcagcaac atggcccatc agccacatac atacagataa tggacccaac 
     421 ttcactagca gggaattcca ggcagcagcc tggtgggcaa acatagaaca tagcacaggg 
     481 ataccctata acccacaaag ccaaggagta gtagagaaca tgaacaaact cctgaagaaa 
     541 attattggga aaattagaga ggaagtagaa tacctagaaa cagcagtagc acaagcatgc 
     601 ttcattttga attttaaaag aaagggg
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.