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LOCUS	    HM070504		    2535 bp    RNA     linear	VRL 16-MAR-2011
DEFINITION  HIV-1 isolate 0702_F21 from Malawi envelope glycoprotein (env)
	    gene, complete cds; and vpu protein (vpu), rev protein (rev), and
	    tat protein (tat) genes, partial cds
ACCESSION   HM070504
VERSION     HM070504.1 GI:325965913
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2535)
            Show all sequences for reference 1
  AUTHORS   Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Fouda,G.G.,
	    Kang,H.H., Mahlokozera,T., Wilks,A.B., Lovingood,R.V., Stacey,A.,
	    Kalilani,L., Meshnick,S.R., Borrow,P., Montefiori,D.C., Denny,T.N.,
	    Letvin,N.L., Shaw,G.M., Hahn,B.H. and Permar,S.R.
  CONSRTM   Center for HIV/AIDS Vaccine Immunology A0167854
  TITLE     Origin and Evolution of HIV-1 in Breast Milk Determined by
	    Single-Genome Amplification and Sequencing
  JOURNAL   J. Virol. 85 (6), 2751-2763 (2011)
  PUBMED    21191008
REFERENCE   2 (bases 1 to 2535)
            Show all sequences for reference 2
  AUTHORS   Salazar-Gonzalez,J.F.
  CONSRTM   Center for HIV/AIDS Vaccine Immunology A0167854
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2010) Department of Medicine, Kaul 806,
	    University of Alabama at Birmingham, 720 20th Street South,
	    Birmingham, AL 35294, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 715900702 Sequence Name
	    0702_F21 Subtype C Patient cohort CHAVI 009 Patient sex F Viral
	    Load 35,200 Sample city Blantyre Sample date 05.15.08 Sample tissue
	    plasma Culture method uncultured Amplification strategy single
	    genome amplification DBID 2572444717 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2535
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="0702_F21"
		     /isolation_source="HIV-infected lactating woman at 4 weeks
		     post-childbirth"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="15-May-2008"
		     /note="subtype: C"
     gene	     1..2535
		     /gene="env"
     CDS	     1..2535
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADZ46627.1"
		     /db_xref="GI:325965917"
		     /translation="MRVRGILRNWKFWWIWGILGFWMFMICNMLENSWVTVYYGVPVW
		     KEAKATLFCASDAKAYKKEVHNVWATHACVPTDPNPQEMFLENVTENFNMWKNDMVEQ
		     MNEDIISLWDESLKPCVKLTPLCVTLNCTIANLNYIIPGEKNQTEIRNCSFNATTEIK
		     DKKKTVYALFYKLDIVPLNNDSSSYRLINCNTSAIKQACPKVSFDPIPIHYCAPAGYA
		     ILKCNNNSFNGIGPCKNVSTVQCTHGIKPIVSTQLLLNGSLAEGDIIIRSENITNNIK
		     TIIVHLNKSVPINCTRPGNNTRKSIRIGPGQAFYANTDIIGNIRLAHCNVSRGLWNKT
		     LENVRTKLKGYFPDKNITFAPASGGDLEITTHSFNCRGEFFYCNTTDLFQNSTEDNST
		     DITLPCNIKQIIRMWQRVGQAMYAPPVAGNITCNSQITGILLTRDGGSDEENETFRPG
		     GGDMRDNWRSELYKYKVVEVKPLGIAPTGAKRRVVDRGREKRAVGMGAVFLGFLGAAG
		     STMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHLLQLTVWGIKQLQARVLAIER
		     YLQDQQLLSLWGCSGKVICTTAVAWNSSWSNKSLTEIWNNMTWMEWDREVSNYTNTIY
		     QLLEESQNQQERNEKDLLELDSWGNLWNWFDISNWLWYIKIFIMIVGGLIGLRIIFAV
		     LSIVNRVRQGYSPLSFQTLTPHPRGPDRLGRIEEEGGEQDKDRSIRLVSGFLALFWDD
		     LRNLCLFSYHRLRDLISIVARAVELLGRSSLRGLQKGWEALKYLGSLVQYWGLELKKS
		     AVSLIDTLAIPVAEGTDRIIEYIQRICRAIYNIPRRIRQGFEAALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ADZ46626.1"
		     /db_xref="GI:325965916"
		     /translation="ESEGDTEELEVLVDMGNLRLLDVHDL"
     gene	     <2098..2402
		     /gene="rev"
     CDS	     <2098..2402
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ADZ46625.1"
		     /db_xref="GI:325965915"
		     /translation="PYPPPEGTRQARKNRRRRWRARQRQIHSISERILSTFLGRPAEP
		     VPFQLPPIERLNINCSESSGTSGTQQSQGTTEGVGSPEVPGESCAVLGSGTKKECC"
     gene	     <2098..2188
		     /gene="tat"
     CDS	     <2098..2188
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ADZ46624.1"
		     /db_xref="GI:325965914"
		     /translation="PLPPTRGDQTGSEESKKKVESKTKTDPFD"
BASE COUNT	895 a	 429 c	  589 g    622 t
ORIGIN
       1 atgagagtga gggggatact gaggaattgg aagttctggt ggatatgggg aatcttaggc 
      61 ttttggatgt tcatgatttg taatatgttg gagaactcgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaaagctact ctattctgtg catcagatgc taaagcatat 
     181 aagaaagaag tacataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatgt ttttggaaaa tgtgacagaa aattttaaca tgtggaaaaa tgacatggta 
     301 gagcagatga atgaggatat aatcagttta tgggatgaaa gcctaaaacc ctgtgtgaag 
     361 ttgaccccac tctgtgtcac tttaaattgt acaattgcta atcttaacta tattattcct 
     421 ggagaaaaaa atcagacaga aataagaaat tgttccttta atgcaaccac agaaataaaa 
     481 gataagaaaa agacagtgta tgcacttttt tataaacttg atatagtacc acttaataat 
     541 gacagcagct catatagatt aataaattgt aatacctcag ccataaaaca agcatgtcca 
     601 aaggtctctt ttgacccaat tcctatacat tattgtgcac cagctggtta tgcgattctt 
     661 aagtgtaata ataattcatt caatggaata ggaccatgca agaatgtcag cacagtacaa 
     721 tgtacacatg gaattaagcc aatagtatca actcaactac tgttaaatgg tagcctagca 
     781 gaaggggaca taataattag gtctgaaaat ataacaaaca acatcaaaac aataatagta 
     841 caccttaata aatctgtacc cattaattgt acaagacctg gcaataatac aagaaagagc 
     901 ataaggatag gaccaggaca agcattctat gcaaatactg acataatagg aaacataaga 
     961 ctagcacatt gtaacgttag tagagggctc tggaacaaaa cattagaaaa tgtaaggaca 
    1021 aaattaaagg gatacttccc tgataaaaat ataacatttg caccagcctc aggaggggat 
    1081 ctagaaatta caacacatag ttttaattgt agaggagaat ttttctattg caatacaaca 
    1141 gacctgtttc agaattcaac agaagataat tcaaccgaca tcacactccc atgcaatata 
    1201 aaacaaatta taagaatgtg gcagagggta gggcaagcaa tgtatgcccc tcccgttgca 
    1261 ggaaacataa catgtaattc acaaatcaca gggatactgt tgacaagaga tggagggagt 
    1321 gatgaagaaa atgagacatt caggcctgga ggaggagata tgagggacaa ttggagaagt 
    1381 gaattatata agtacaaagt ggtagaagtt aagccattgg gaatagcacc cactggggca 
    1441 aaaaggagag tggtggacag aggcagagaa aaaagagcag taggaatggg agctgtgttc 
    1501 cttgggttct tgggagcagc aggaagcact atgggcgcgg cgtcaataac gctgacggta 
    1561 caggccagac aactgttgtc tggcatagtg caacagcaaa gcaatttgct gaaggctata 
    1621 gaggcgcaac agcatctgtt gcaactcaca gtctggggca ttaagcagct ccaggcaaga 
    1681 gtcctggcta tagaaagata cctacaggat caacagctcc taagcctttg gggctgctct 
    1741 ggaaaagtca tctgcaccac tgctgtggct tggaactcca gttggagtaa taaatctcta 
    1801 acagaaattt ggaataacat gacctggatg gaatgggata gagaagttag taattacaca 
    1861 aacaccatat atcagttgct tgaagaatcg caaaatcagc aggaaagaaa tgaaaaagat 
    1921 ttattagaat tggacagctg gggaaatcta tggaattggt ttgacatatc aaattggcta 
    1981 tggtatataa aaatattcat aatgatagta ggaggattga taggtttaag aataattttt 
    2041 gctgtgctat ctatagtgaa tagagttagg cagggatact cacctttgtc gtttcagacc 
    2101 cttacccccc acccgagggg accagacagg ctcggaagaa tcgaagaaga aggtggagag 
    2161 caagacaaag acagatccat tcgattagtg agcggattct tagcactttt ctgggacgac 
    2221 ctgcggaacc tgtgcctttt cagctaccac cgattgagag acttaatatc aattgtagcg 
    2281 agagcagtgg aacttctggg acgcagcagt ctcaggggac tacagaaggg gtgggaagcc 
    2341 ctgaagtacc tggggagtct tgtgcagtat tggggtctgg aactaaaaaa gagtgctgtt 
    2401 agtctaattg ataccttagc aataccagta gctgaaggaa cagataggat tatagaatac 
    2461 atacaaagaa tttgtagggc tatctataac atccctagaa gaataagaca gggctttgaa 
    2521 gcagctttgc tataa
//
last modified: Tue May 31 10:56 2022


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