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LOCUS HM070504 2535 bp RNA linear VRL 16-MAR-2011
DEFINITION HIV-1 isolate 0702_F21 from Malawi envelope glycoprotein (env)
gene, complete cds; and vpu protein (vpu), rev protein (rev), and
tat protein (tat) genes, partial cds
ACCESSION HM070504
VERSION HM070504.1 GI:325965913
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2535)
Show all sequences for reference 1
AUTHORS Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Fouda,G.G.,
Kang,H.H., Mahlokozera,T., Wilks,A.B., Lovingood,R.V., Stacey,A.,
Kalilani,L., Meshnick,S.R., Borrow,P., Montefiori,D.C., Denny,T.N.,
Letvin,N.L., Shaw,G.M., Hahn,B.H. and Permar,S.R.
CONSRTM Center for HIV/AIDS Vaccine Immunology A0167854
TITLE Origin and Evolution of HIV-1 in Breast Milk Determined by
Single-Genome Amplification and Sequencing
JOURNAL J. Virol. 85 (6), 2751-2763 (2011)
PUBMED 21191008
REFERENCE 2 (bases 1 to 2535)
Show all sequences for reference 2
AUTHORS Salazar-Gonzalez,J.F.
CONSRTM Center for HIV/AIDS Vaccine Immunology A0167854
TITLE Direct Submission
JOURNAL Submitted (08-APR-2010) Department of Medicine, Kaul 806,
University of Alabama at Birmingham, 720 20th Street South,
Birmingham, AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 715900702 Sequence Name
0702_F21 Subtype C Patient cohort CHAVI 009 Patient sex F Viral
Load 35,200 Sample city Blantyre Sample date 05.15.08 Sample tissue
plasma Culture method uncultured Amplification strategy single
genome amplification DBID 2572444717 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2535
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="0702_F21"
/isolation_source="HIV-infected lactating woman at 4 weeks
post-childbirth"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="15-May-2008"
/note="subtype: C"
gene 1..2535
/gene="env"
CDS 1..2535
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADZ46627.1"
/db_xref="GI:325965917"
/translation="MRVRGILRNWKFWWIWGILGFWMFMICNMLENSWVTVYYGVPVW
KEAKATLFCASDAKAYKKEVHNVWATHACVPTDPNPQEMFLENVTENFNMWKNDMVEQ
MNEDIISLWDESLKPCVKLTPLCVTLNCTIANLNYIIPGEKNQTEIRNCSFNATTEIK
DKKKTVYALFYKLDIVPLNNDSSSYRLINCNTSAIKQACPKVSFDPIPIHYCAPAGYA
ILKCNNNSFNGIGPCKNVSTVQCTHGIKPIVSTQLLLNGSLAEGDIIIRSENITNNIK
TIIVHLNKSVPINCTRPGNNTRKSIRIGPGQAFYANTDIIGNIRLAHCNVSRGLWNKT
LENVRTKLKGYFPDKNITFAPASGGDLEITTHSFNCRGEFFYCNTTDLFQNSTEDNST
DITLPCNIKQIIRMWQRVGQAMYAPPVAGNITCNSQITGILLTRDGGSDEENETFRPG
GGDMRDNWRSELYKYKVVEVKPLGIAPTGAKRRVVDRGREKRAVGMGAVFLGFLGAAG
STMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHLLQLTVWGIKQLQARVLAIER
YLQDQQLLSLWGCSGKVICTTAVAWNSSWSNKSLTEIWNNMTWMEWDREVSNYTNTIY
QLLEESQNQQERNEKDLLELDSWGNLWNWFDISNWLWYIKIFIMIVGGLIGLRIIFAV
LSIVNRVRQGYSPLSFQTLTPHPRGPDRLGRIEEEGGEQDKDRSIRLVSGFLALFWDD
LRNLCLFSYHRLRDLISIVARAVELLGRSSLRGLQKGWEALKYLGSLVQYWGLELKKS
AVSLIDTLAIPVAEGTDRIIEYIQRICRAIYNIPRRIRQGFEAALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="ADZ46626.1"
/db_xref="GI:325965916"
/translation="ESEGDTEELEVLVDMGNLRLLDVHDL"
gene <2098..2402
/gene="rev"
CDS <2098..2402
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ADZ46625.1"
/db_xref="GI:325965915"
/translation="PYPPPEGTRQARKNRRRRWRARQRQIHSISERILSTFLGRPAEP
VPFQLPPIERLNINCSESSGTSGTQQSQGTTEGVGSPEVPGESCAVLGSGTKKECC"
gene <2098..2188
/gene="tat"
CDS <2098..2188
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ADZ46624.1"
/db_xref="GI:325965914"
/translation="PLPPTRGDQTGSEESKKKVESKTKTDPFD"
BASE COUNT 895 a 429 c 589 g 622 t
ORIGIN
1 atgagagtga gggggatact gaggaattgg aagttctggt ggatatgggg aatcttaggc
61 ttttggatgt tcatgatttg taatatgttg gagaactcgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaaagctact ctattctgtg catcagatgc taaagcatat
181 aagaaagaag tacataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatgt ttttggaaaa tgtgacagaa aattttaaca tgtggaaaaa tgacatggta
301 gagcagatga atgaggatat aatcagttta tgggatgaaa gcctaaaacc ctgtgtgaag
361 ttgaccccac tctgtgtcac tttaaattgt acaattgcta atcttaacta tattattcct
421 ggagaaaaaa atcagacaga aataagaaat tgttccttta atgcaaccac agaaataaaa
481 gataagaaaa agacagtgta tgcacttttt tataaacttg atatagtacc acttaataat
541 gacagcagct catatagatt aataaattgt aatacctcag ccataaaaca agcatgtcca
601 aaggtctctt ttgacccaat tcctatacat tattgtgcac cagctggtta tgcgattctt
661 aagtgtaata ataattcatt caatggaata ggaccatgca agaatgtcag cacagtacaa
721 tgtacacatg gaattaagcc aatagtatca actcaactac tgttaaatgg tagcctagca
781 gaaggggaca taataattag gtctgaaaat ataacaaaca acatcaaaac aataatagta
841 caccttaata aatctgtacc cattaattgt acaagacctg gcaataatac aagaaagagc
901 ataaggatag gaccaggaca agcattctat gcaaatactg acataatagg aaacataaga
961 ctagcacatt gtaacgttag tagagggctc tggaacaaaa cattagaaaa tgtaaggaca
1021 aaattaaagg gatacttccc tgataaaaat ataacatttg caccagcctc aggaggggat
1081 ctagaaatta caacacatag ttttaattgt agaggagaat ttttctattg caatacaaca
1141 gacctgtttc agaattcaac agaagataat tcaaccgaca tcacactccc atgcaatata
1201 aaacaaatta taagaatgtg gcagagggta gggcaagcaa tgtatgcccc tcccgttgca
1261 ggaaacataa catgtaattc acaaatcaca gggatactgt tgacaagaga tggagggagt
1321 gatgaagaaa atgagacatt caggcctgga ggaggagata tgagggacaa ttggagaagt
1381 gaattatata agtacaaagt ggtagaagtt aagccattgg gaatagcacc cactggggca
1441 aaaaggagag tggtggacag aggcagagaa aaaagagcag taggaatggg agctgtgttc
1501 cttgggttct tgggagcagc aggaagcact atgggcgcgg cgtcaataac gctgacggta
1561 caggccagac aactgttgtc tggcatagtg caacagcaaa gcaatttgct gaaggctata
1621 gaggcgcaac agcatctgtt gcaactcaca gtctggggca ttaagcagct ccaggcaaga
1681 gtcctggcta tagaaagata cctacaggat caacagctcc taagcctttg gggctgctct
1741 ggaaaagtca tctgcaccac tgctgtggct tggaactcca gttggagtaa taaatctcta
1801 acagaaattt ggaataacat gacctggatg gaatgggata gagaagttag taattacaca
1861 aacaccatat atcagttgct tgaagaatcg caaaatcagc aggaaagaaa tgaaaaagat
1921 ttattagaat tggacagctg gggaaatcta tggaattggt ttgacatatc aaattggcta
1981 tggtatataa aaatattcat aatgatagta ggaggattga taggtttaag aataattttt
2041 gctgtgctat ctatagtgaa tagagttagg cagggatact cacctttgtc gtttcagacc
2101 cttacccccc acccgagggg accagacagg ctcggaagaa tcgaagaaga aggtggagag
2161 caagacaaag acagatccat tcgattagtg agcggattct tagcactttt ctgggacgac
2221 ctgcggaacc tgtgcctttt cagctaccac cgattgagag acttaatatc aattgtagcg
2281 agagcagtgg aacttctggg acgcagcagt ctcaggggac tacagaaggg gtgggaagcc
2341 ctgaagtacc tggggagtct tgtgcagtat tggggtctgg aactaaaaaa gagtgctgtt
2401 agtctaattg ataccttagc aataccagta gctgaaggaa cagataggat tatagaatac
2461 atacaaagaa tttgtagggc tatctataac atccctagaa gaataagaca gggctttgaa
2521 gcagctttgc tataa
//
last modified: Tue May 31 10:56 2022