View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS HM070485 2586 bp RNA linear VRL 16-MAR-2011
DEFINITION HIV-1 isolate 0301bmL_B3 from Malawi envelope glycoprotein (env)
gene, complete cds; and vpu protein (vpu), rev protein (rev), and
tat protein (tat) genes, partial cds
ACCESSION HM070485
VERSION HM070485.1 GI:325965822
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2586)
Show all sequences for reference 1
AUTHORS Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Fouda,G.G.,
Kang,H.H., Mahlokozera,T., Wilks,A.B., Lovingood,R.V., Stacey,A.,
Kalilani,L., Meshnick,S.R., Borrow,P., Montefiori,D.C., Denny,T.N.,
Letvin,N.L., Shaw,G.M., Hahn,B.H. and Permar,S.R.
CONSRTM Center for HIV/AIDS Vaccine Immunology A0167854
TITLE Origin and Evolution of HIV-1 in Breast Milk Determined by
Single-Genome Amplification and Sequencing
JOURNAL J. Virol. 85 (6), 2751-2763 (2011)
PUBMED 21191008
REFERENCE 2 (bases 1 to 2586)
Show all sequences for reference 2
AUTHORS Salazar-Gonzalez,J.F.
CONSRTM Center for HIV/AIDS Vaccine Immunology A0167854
TITLE Direct Submission
JOURNAL Submitted (08-APR-2010) Department of Medicine, Kaul 806,
University of Alabama at Birmingham, 720 20th Street South,
Birmingham, AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 715900301 Sequence Name
0301bmL_B3 Subtype C Patient cohort CHAVI 009 Patient sex F Viral
Load 1,315 Sample city Blantyre Sample date 04.24.08 Sample tissue
breast milk supernatant Culture method uncultured Amplification
strategy single genome amplification DBID 1464378245
##HIVDataBaseData-END## Viral load given in GenBank structured
comment is the VL for breast milk; the VL data in the LANL HIV
database is the patient's plasma VL at the given timepoint.
FEATURES Location/Qualifiers
source 1..2586
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="0301bmL_B3"
/isolation_source="HIV-infected lactating woman at 4 weeks
post-childbirth"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="24-Apr-2008"
/note="subtype: C"
gene 1..2586
/gene="env"
CDS 1..2586
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADZ46555.1"
/db_xref="GI:325965826"
/translation="MRVRGMMRNWQQWWIWGILGFWMLMMCSVLGNMWVTVYYGVPVW
KEAKATLFCASDAKAYEREVHNVWATHACVPTDPNPQEIVLENVTESFNMWKNDMVDQ
MHEDIISLWDQSLKPCVRLTPLCVTLNCTDVKVSSNSNDTASGSNSTDNVVMKNCSFN
ATTEIKDKKHKVHALFYELDVVSMNNSNNNSMYRLINCNTSAITQSCPKVSFDPIPIH
YCAPAGYAILKCNNKTFNGTGPCHNVSTVQCTHGIKPVISTQLLLNGSLAEEEIVISS
EKLTNNVKTIIVHLNESVEIVCTRPNNNTRKSVRIGPGQTFYATNAIIGKIRQAYCNI
SEYKWNKTLQQVRRKLAEYFPNKTITFNSSSGGDLEITTHSFNCRGEFFYCNTSRLFN
GTFNGTYNGNYSGNGTITIPCRIKQIINMWQEVGKAIYAPPIAGNITCKSNITGLLLT
RDGGQGPDKDNTTETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTTAKRRVVEREK
RAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLFGIVQQQSNLLRAIEAQQHMLQL
TVWGIKQLQTRVLAIERYLKDQQLLGMWGCSGKLICTTAVAWNSSWSNKSQSDIWDNM
TWMQWDREISNYTNTIYQLLEESQSQQEKNEKELLELDKWNNLWNWFDITKWLWYIKI
FIMIVGGLIGLRIIFAVISVANRVRQGYSPLSFQTLIPSPRGPDRLERIEGEGGEQDR
DRSIRLVSGFLSLAWDDLRSLCLFSYHQLRDFILIVTRAVQLLGSNSLRGLQRGWEAL
KYLGSLVQYWSQELKKSAISLLDTIAIAVAEGTDRIIEVLQRICRAVLNIPRRVRQGF
EAALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="ADZ46554.1"
/db_xref="GI:325965825"
/translation="ESEGDDEELATMVDMGHLRLLDVNDV"
gene <2149..2396
/gene="rev"
CDS <2149..2396
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ADZ46553.1"
/db_xref="GI:325965824"
/translation="PYPKPEGTRQARKNRRRRWRARQRQIHSISERILVTCLGRPAEP
VPFQLPPIERLHIDCDESGATSGKQQSQGTAEGVGSP"
gene <2149..2239
/gene="tat"
CDS <2149..2239
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ADZ46552.1"
/db_xref="GI:325965823"
/translation="PLSQARGDPTGSKESKEKVESKTETDPFD"
BASE COUNT 918 a 434 c 609 g 625 t
ORIGIN
1 atgagagtga gggggatgat gaggaattgg caacaatggt ggatatgggg catcttaggc
61 ttttggatgt taatgatgtg tagtgtgttg gggaacatgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaaagctact ctattctgtg catcagatgc taaagcttat
181 gagagagaag tacataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatag ttttggaaaa tgtaacagaa agttttaaca tgtggaaaaa tgacatggta
301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaaacc atgtgtaagg
361 ctaaccccac tctgtgtcac tttaaattgt acagatgtta aggttagtag taatagtaat
421 gatactgcca gtggtagtaa ttctacagat aatgtagtaa tgaaaaattg ctctttcaat
481 gcaaccacag aaataaaaga taagaaacat aaggtgcatg cactttttta tgaacttgat
541 gtagtatcaa tgaataacag taataacaat agtatgtata gattaataaa ttgcaatacc
601 tcagccataa cacaatcctg tccaaaggtc tcttttgacc caattcctat acattattgt
661 gcgccagctg gttatgcgat tctaaagtgt aataataaga ctttcaatgg gacaggacca
721 tgccataatg tcagcacagt acaatgtaca catggaatta agccagtgat atcaactcaa
781 ctactgttaa atggtagcct agcagaagaa gagatagtaa ttagctctga aaagttgaca
841 aacaatgtca aaacaataat agtacacctt aatgaatctg tggaaattgt gtgtacaaga
901 cccaacaata atacaaggaa aagtgtaagg ataggaccag gacaaacatt ctatgcaaca
961 aatgccataa tagggaaaat aagacaagca tattgtaaca ttagtgaata taaatggaac
1021 aaaactttac aacaggtaag aagaaaatta gcagaatact tccctaataa aacaataacg
1081 tttaactcat cctcaggagg ggatctagaa atcacaaccc atagctttaa ttgtagagga
1141 gaatttttct attgcaatac atcaagacta tttaatggaa catttaatgg aacatacaat
1201 gggaattaca gtgggaatgg taccatcacc ataccatgca gaataaaaca aattataaat
1261 atgtggcagg aggtaggaaa ggcaatatat gcccctccca ttgcaggaaa cataacatgt
1321 aaatcaaata tcacaggact actactgaca cgtgatggag gacaaggacc agataaagat
1381 aacacaacag agacattcag acctggagga ggagacatga gggacaattg gagaagtgaa
1441 ttatataaat ataaagtagt agaaattaag ccattgggaa tagcacccac tacggcaaaa
1501 agaagagtgg tggagagaga aaaaagagca gtgggaatag gagctgtgtt ccttgggttc
1561 ttgggagcag caggaagcac tatgggcgca gcgtcaataa cgctgacggt acaggccaga
1621 caactgttgt ttggcatagt gcaacagcaa agcaatttgc tgagagccat agaggcgcaa
1681 cagcatatgt tgcaactcac agtctggggc attaagcagc tccagacaag agtcctggcc
1741 atagaaagat acctaaagga tcaacagctc ctagggatgt ggggctgctc tggaaaactc
1801 atctgcacca ctgctgtggc ctggaactcc agttggagca ataaatcaca gtcagatatt
1861 tgggataaca tgacctggat gcagtgggat agagaaatta gtaattacac aaacacgata
1921 taccagttat tagaagaatc acaaagccag caggagaaaa atgaaaagga attgttagaa
1981 ttggacaaat ggaacaatct gtggaattgg tttgacataa caaagtggct gtggtatata
2041 aaaatattca taatgatagt aggaggcttg ataggtttaa gaataatttt tgcagtgatc
2101 tctgtagcga atagagttag gcagggctac tcacctttgt cttttcagac ccttatccca
2161 agcccgaggg gacccgacag gctcgaaaga atcgaaggag aaggtggaga gcaagacaga
2221 gacagatcca ttcgattagt gagcggattc ttgtcacttg cctgggacga cctgcggagc
2281 ctgtgccttt tcagctacca ccaattgaga gacttcatat tgattgtgac gagagcggtg
2341 caacttctgg gaagcaacag tctcagggga ctgcagaggg ggtgggaagc ccttaagtat
2401 ctgggaagtc ttgtgcagta ttggagtcag gaactaaaaa agagtgctat tagtctgctt
2461 gataccatag caatagcagt agctgaggga acagatagga ttatagaagt actacaaaga
2521 atttgtagag ctgtcctcaa tatacctaga agagtaagac agggctttga agcagctttg
2581 ctataa
//
last modified: Tue May 31 10:56 2022