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LOCUS HM070463 2568 bp RNA linear VRL 16-MAR-2011
DEFINITION HIV-1 isolate 0301_C9 from Malawi envelope glycoprotein (env) gene,
complete cds; and vpu protein (vpu), rev protein (rev), and tat
protein (tat) genes, partial cds
ACCESSION HM070463
VERSION HM070463.1 GI:325965713
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2568)
Show all sequences for reference 1
AUTHORS Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Fouda,G.G.,
Kang,H.H., Mahlokozera,T., Wilks,A.B., Lovingood,R.V., Stacey,A.,
Kalilani,L., Meshnick,S.R., Borrow,P., Montefiori,D.C., Denny,T.N.,
Letvin,N.L., Shaw,G.M., Hahn,B.H. and Permar,S.R.
CONSRTM Center for HIV/AIDS Vaccine Immunology A0167854
TITLE Origin and Evolution of HIV-1 in Breast Milk Determined by
Single-Genome Amplification and Sequencing
JOURNAL J. Virol. 85 (6), 2751-2763 (2011)
PUBMED 21191008
REFERENCE 2 (bases 1 to 2568)
Show all sequences for reference 2
AUTHORS Salazar-Gonzalez,J.F.
CONSRTM Center for HIV/AIDS Vaccine Immunology A0167854
TITLE Direct Submission
JOURNAL Submitted (08-APR-2010) Department of Medicine, Kaul 806,
University of Alabama at Birmingham, 720 20th Street South,
Birmingham, AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 715900301 Sequence Name
0301_C9 Subtype C Patient cohort CHAVI 009 Patient sex F Viral Load
159,000 Sample city Blantyre Sample date 04.24.08 Sample tissue
plasma Culture method uncultured Amplification strategy single
genome amplification DBID 3625036500 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2568
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="0301_C9"
/isolation_source="HIV-infected lactating woman at 4 weeks
post-childbirth"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="24-Apr-2008"
/note="subtype: C"
gene 1..2568
/gene="env"
CDS 1..2568
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADZ46468.1"
/db_xref="GI:325965717"
/translation="MRVRGMMRNWQQWWIWGILGFWMLMMCSVLGNMWVTVYYGVPVW
KEAKATLFCASDAKAYETEVHNVWATHACVPTDPNPQEMVLENVTESFNMWKNDMVDQ
MHEDIISLWDQSLKPCVKLTPLCVTLDCRDVNVTRNNDTTSGSNSTDDVGMKNCSFNA
TTELKDKQQKVHALFYKLDIVSLNNSNNNSMYRLIKCNTSTITQACPKVSFEPIPIHY
CAPAGYAILKCNNKTFNGTGPCHNVSTVQCTHGIKPVISTQLLLNGSLAEEEIVIRSE
NITNNAKIIIVHLNESVEIVCTRPNNNTRKRVRIGIGPGQTFYATGAIIGNIRQAHCN
ISADKWNKTLQQVRRKLAEYFPNKTITFNSSSGGDLEITTHSFNCRGEFFYCNTSRLF
NGTFNETYNETYNGNGTITILCRIKQIINMWQEVGKAMYAPPIAGNITCKSNITGLLL
TRDGGQGPDKDNTTETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTTAKRRVVERE
KRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLFGIVQQQSNLLRAIEAQQHMLQ
LTVWGIKQLQTRVLAIERYLKDQQLLGLWGCSGKLICTTAVAWNSSWSNKSQSDIWDN
MTWMQWDREISNYTNTIYQLLEDSQSQQEKNEKELLELDKWNNLWNWFDITRWLWYIK
IFIMIVGGLIGLRIIFAVISVANRVRQGYSPLSFQTLIPNPRGPDRLERIEEEGGEQD
RDRSIRLVSGFFSLAWDDLRSLCLFSYHHLRDFILIVTRAVQLGLQRGWEVLKYLGSL
VQYWSQELKKSAISLLDTIAIIVAEGTDRIIEVLQRICRAILHIPRRIRQGFEAALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="ADZ46467.1"
/db_xref="GI:325965716"
/translation="ESEGDDEELATMVDMGNLRLLDVNDV"
gene <2152..2378
/gene="rev"
CDS <2152..2378
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ADZ46466.1"
/db_xref="GI:325965715"
/translation="PYPKPEGTRQARKNRRRRWRARQRQIHSISERILLTCLGRPAEP
VPFQLPPLERLHIDCDESGATGTAEGVGSP"
gene <2152..2242
/gene="tat"
CDS <2152..2242
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ADZ46465.1"
/db_xref="GI:325965714"
/translation="PLSQTRGDPTGSKESKKKVESKTETDPFD"
BASE COUNT 920 a 433 c 598 g 617 t
ORIGIN
1 atgagagtga gggggatgat gaggaattgg caacaatggt ggatatgggg aatcttaggc
61 ttttggatgt taatgatgtg tagtgtgttg gggaacatgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaaagctact ctattctgtg catcagatgc taaagcatat
181 gagacagaag tacataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatgg ttttggaaaa tgtaacagaa agttttaaca tgtggaaaaa tgacatggta
301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaaacc atgtgtaaag
361 ctaaccccac tctgtgtcac tttagattgt agagatgtta atgttaccag gaataatgat
421 actaccagtg gtagtaattc tacagatgat gtaggaatga aaaattgctc tttcaatgca
481 accacagaac taaaagataa gcaacagaag gtgcatgcac ttttttataa acttgatata
541 gtatcactta ataacagtaa taacaacagt atgtatagat taataaaatg caatacctca
601 accataacac aagcctgtcc aaaggtctct tttgaaccaa ttcctataca ttattgtgcg
661 ccagctggtt atgcgattct aaagtgtaat aataagacat tcaatgggac aggaccatgt
721 cataatgtca gcacagtaca atgtacacat ggaattaagc cagtgatatc aactcaacta
781 ctgttaaatg gtagcctagc agaagaagag atagtaatta gatctgaaaa tataacaaac
841 aatgccaaaa taataatagt acaccttaat gaatcggtgg aaattgtgtg tacaagaccc
901 aacaataata caaggaaaag ggtaaggata ggaataggac caggacaaac attctatgca
961 acaggtgcca taatagggaa cataagacaa gcacattgta acattagtgc agataaatgg
1021 aacaaaactt tacaacaggt aagaagaaaa ttagcagaat acttccctaa taaaacaata
1081 acgtttaact catcctcagg aggggatcta gaaattacaa cacatagctt taattgtaga
1141 ggagaatttt tctattgcaa tacatcaaga ctatttaatg gaacatttaa tgaaacatac
1201 aatgagacat acaatgggaa tggtaccatc actatactat gcagaataaa acaaattata
1261 aatatgtggc aggaggtagg aaaggcaatg tatgcccctc ccattgcagg aaacataaca
1321 tgtaaatcaa atatcacagg actactactg acacgtgatg gaggacaagg accagataaa
1381 gataacacaa cagagacatt cagacctgga ggaggagaca tgagggacaa ttggagaagt
1441 gaattatata aatataaagt agtagaaatt aagccattgg gaatagcacc cactacggca
1501 aaaagaagag tggtggagag agaaaaaaga gcagtgggaa taggagctgt gttccttggg
1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcaa taacgctgac ggtacaggcc
1621 agacaactgt tgtttggtat agtgcaacag caaagcaatt tgctgagagc catagaggcg
1681 caacagcata tgttgcaact cacagtctgg ggcattaagc agctccagac aagagtcctg
1741 gccatagaaa gatacctaaa ggatcaacag ctcctagggc tgtggggctg ctctggaaaa
1801 ctcatctgca ccactgctgt ggcctggaac tccagttgga gtaataaatc acaatcagat
1861 atttgggata acatgacctg gatgcagtgg gatagagaaa ttagtaatta cacaaacaca
1921 atataccagt tattagaaga ctcgcaaagc cagcaggaga aaaatgaaaa ggaattgtta
1981 gaattagaca agtggaacaa tctgtggaat tggtttgaca taacaaggtg gctgtggtat
2041 ataaaaatat tcataatgat agtaggaggc ttgataggtt taagaataat ttttgctgtg
2101 atctctgtag cgaatagagt taggcagggc tactcacctt tgtcttttca gacccttatc
2161 ccaaacccga ggggacccga caggctcgaa agaatcgaag aagaaggtgg agagcaagac
2221 agagacagat ccattcgatt agtgagcgga ttcttctcac ttgcctggga cgacctgcgg
2281 agcctgtgcc ttttcagcta ccaccacttg agagacttca tattgattgt gacgagagcg
2341 gtgcaactgg gactgcagag ggggtgggaa gtccttaagt atctgggaag tcttgtgcag
2401 tattggagtc aggaattaaa aaagagtgct attagtctgc ttgataccat agcaataata
2461 gtagctgagg gaacagatag gattatagaa gtactacaaa gaatctgtag agctatcctc
2521 cacataccta gaagaataag acagggcttt gaagcagctt tgctataa
//
last modified: Tue May 31 10:56 2022