HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    HM070463		    2568 bp    RNA     linear	VRL 16-MAR-2011
DEFINITION  HIV-1 isolate 0301_C9 from Malawi envelope glycoprotein (env) gene,
	    complete cds; and vpu protein (vpu), rev protein (rev), and tat
	    protein (tat) genes, partial cds
ACCESSION   HM070463
VERSION     HM070463.1 GI:325965713
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2568)
            Show all sequences for reference 1
  AUTHORS   Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Fouda,G.G.,
	    Kang,H.H., Mahlokozera,T., Wilks,A.B., Lovingood,R.V., Stacey,A.,
	    Kalilani,L., Meshnick,S.R., Borrow,P., Montefiori,D.C., Denny,T.N.,
	    Letvin,N.L., Shaw,G.M., Hahn,B.H. and Permar,S.R.
  CONSRTM   Center for HIV/AIDS Vaccine Immunology A0167854
  TITLE     Origin and Evolution of HIV-1 in Breast Milk Determined by
	    Single-Genome Amplification and Sequencing
  JOURNAL   J. Virol. 85 (6), 2751-2763 (2011)
  PUBMED    21191008
REFERENCE   2 (bases 1 to 2568)
            Show all sequences for reference 2
  AUTHORS   Salazar-Gonzalez,J.F.
  CONSRTM   Center for HIV/AIDS Vaccine Immunology A0167854
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2010) Department of Medicine, Kaul 806,
	    University of Alabama at Birmingham, 720 20th Street South,
	    Birmingham, AL 35294, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 715900301 Sequence Name
	    0301_C9 Subtype C Patient cohort CHAVI 009 Patient sex F Viral Load
	    159,000 Sample city Blantyre Sample date 04.24.08 Sample tissue
	    plasma Culture method uncultured Amplification strategy single
	    genome amplification DBID 3625036500 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2568
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="0301_C9"
		     /isolation_source="HIV-infected lactating woman at 4 weeks
		     post-childbirth"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="24-Apr-2008"
		     /note="subtype: C"
     gene	     1..2568
		     /gene="env"
     CDS	     1..2568
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADZ46468.1"
		     /db_xref="GI:325965717"
		     /translation="MRVRGMMRNWQQWWIWGILGFWMLMMCSVLGNMWVTVYYGVPVW
		     KEAKATLFCASDAKAYETEVHNVWATHACVPTDPNPQEMVLENVTESFNMWKNDMVDQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLDCRDVNVTRNNDTTSGSNSTDDVGMKNCSFNA
		     TTELKDKQQKVHALFYKLDIVSLNNSNNNSMYRLIKCNTSTITQACPKVSFEPIPIHY
		     CAPAGYAILKCNNKTFNGTGPCHNVSTVQCTHGIKPVISTQLLLNGSLAEEEIVIRSE
		     NITNNAKIIIVHLNESVEIVCTRPNNNTRKRVRIGIGPGQTFYATGAIIGNIRQAHCN
		     ISADKWNKTLQQVRRKLAEYFPNKTITFNSSSGGDLEITTHSFNCRGEFFYCNTSRLF
		     NGTFNETYNETYNGNGTITILCRIKQIINMWQEVGKAMYAPPIAGNITCKSNITGLLL
		     TRDGGQGPDKDNTTETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTTAKRRVVERE
		     KRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLFGIVQQQSNLLRAIEAQQHMLQ
		     LTVWGIKQLQTRVLAIERYLKDQQLLGLWGCSGKLICTTAVAWNSSWSNKSQSDIWDN
		     MTWMQWDREISNYTNTIYQLLEDSQSQQEKNEKELLELDKWNNLWNWFDITRWLWYIK
		     IFIMIVGGLIGLRIIFAVISVANRVRQGYSPLSFQTLIPNPRGPDRLERIEEEGGEQD
		     RDRSIRLVSGFFSLAWDDLRSLCLFSYHHLRDFILIVTRAVQLGLQRGWEVLKYLGSL
		     VQYWSQELKKSAISLLDTIAIIVAEGTDRIIEVLQRICRAILHIPRRIRQGFEAALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ADZ46467.1"
		     /db_xref="GI:325965716"
		     /translation="ESEGDDEELATMVDMGNLRLLDVNDV"
     gene	     <2152..2378
		     /gene="rev"
     CDS	     <2152..2378
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ADZ46466.1"
		     /db_xref="GI:325965715"
		     /translation="PYPKPEGTRQARKNRRRRWRARQRQIHSISERILLTCLGRPAEP
		     VPFQLPPLERLHIDCDESGATGTAEGVGSP"
     gene	     <2152..2242
		     /gene="tat"
     CDS	     <2152..2242
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ADZ46465.1"
		     /db_xref="GI:325965714"
		     /translation="PLSQTRGDPTGSKESKKKVESKTETDPFD"
BASE COUNT	920 a	 433 c	  598 g    617 t
ORIGIN
       1 atgagagtga gggggatgat gaggaattgg caacaatggt ggatatgggg aatcttaggc 
      61 ttttggatgt taatgatgtg tagtgtgttg gggaacatgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaaagctact ctattctgtg catcagatgc taaagcatat 
     181 gagacagaag tacataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatgg ttttggaaaa tgtaacagaa agttttaaca tgtggaaaaa tgacatggta 
     301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaaacc atgtgtaaag 
     361 ctaaccccac tctgtgtcac tttagattgt agagatgtta atgttaccag gaataatgat 
     421 actaccagtg gtagtaattc tacagatgat gtaggaatga aaaattgctc tttcaatgca 
     481 accacagaac taaaagataa gcaacagaag gtgcatgcac ttttttataa acttgatata 
     541 gtatcactta ataacagtaa taacaacagt atgtatagat taataaaatg caatacctca 
     601 accataacac aagcctgtcc aaaggtctct tttgaaccaa ttcctataca ttattgtgcg 
     661 ccagctggtt atgcgattct aaagtgtaat aataagacat tcaatgggac aggaccatgt 
     721 cataatgtca gcacagtaca atgtacacat ggaattaagc cagtgatatc aactcaacta 
     781 ctgttaaatg gtagcctagc agaagaagag atagtaatta gatctgaaaa tataacaaac 
     841 aatgccaaaa taataatagt acaccttaat gaatcggtgg aaattgtgtg tacaagaccc 
     901 aacaataata caaggaaaag ggtaaggata ggaataggac caggacaaac attctatgca 
     961 acaggtgcca taatagggaa cataagacaa gcacattgta acattagtgc agataaatgg 
    1021 aacaaaactt tacaacaggt aagaagaaaa ttagcagaat acttccctaa taaaacaata 
    1081 acgtttaact catcctcagg aggggatcta gaaattacaa cacatagctt taattgtaga 
    1141 ggagaatttt tctattgcaa tacatcaaga ctatttaatg gaacatttaa tgaaacatac 
    1201 aatgagacat acaatgggaa tggtaccatc actatactat gcagaataaa acaaattata 
    1261 aatatgtggc aggaggtagg aaaggcaatg tatgcccctc ccattgcagg aaacataaca 
    1321 tgtaaatcaa atatcacagg actactactg acacgtgatg gaggacaagg accagataaa 
    1381 gataacacaa cagagacatt cagacctgga ggaggagaca tgagggacaa ttggagaagt 
    1441 gaattatata aatataaagt agtagaaatt aagccattgg gaatagcacc cactacggca 
    1501 aaaagaagag tggtggagag agaaaaaaga gcagtgggaa taggagctgt gttccttggg 
    1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcaa taacgctgac ggtacaggcc 
    1621 agacaactgt tgtttggtat agtgcaacag caaagcaatt tgctgagagc catagaggcg 
    1681 caacagcata tgttgcaact cacagtctgg ggcattaagc agctccagac aagagtcctg 
    1741 gccatagaaa gatacctaaa ggatcaacag ctcctagggc tgtggggctg ctctggaaaa 
    1801 ctcatctgca ccactgctgt ggcctggaac tccagttgga gtaataaatc acaatcagat 
    1861 atttgggata acatgacctg gatgcagtgg gatagagaaa ttagtaatta cacaaacaca 
    1921 atataccagt tattagaaga ctcgcaaagc cagcaggaga aaaatgaaaa ggaattgtta 
    1981 gaattagaca agtggaacaa tctgtggaat tggtttgaca taacaaggtg gctgtggtat 
    2041 ataaaaatat tcataatgat agtaggaggc ttgataggtt taagaataat ttttgctgtg 
    2101 atctctgtag cgaatagagt taggcagggc tactcacctt tgtcttttca gacccttatc 
    2161 ccaaacccga ggggacccga caggctcgaa agaatcgaag aagaaggtgg agagcaagac 
    2221 agagacagat ccattcgatt agtgagcgga ttcttctcac ttgcctggga cgacctgcgg 
    2281 agcctgtgcc ttttcagcta ccaccacttg agagacttca tattgattgt gacgagagcg 
    2341 gtgcaactgg gactgcagag ggggtgggaa gtccttaagt atctgggaag tcttgtgcag 
    2401 tattggagtc aggaattaaa aaagagtgct attagtctgc ttgataccat agcaataata 
    2461 gtagctgagg gaacagatag gattatagaa gtactacaaa gaatctgtag agctatcctc 
    2521 cacataccta gaagaataag acagggcttt gaagcagctt tgctataa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.