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LOCUS HM056588 1680 bp RNA linear VRL 09-APR-2011
DEFINITION HIV-1 isolate 251904H from USA pol protein (pol) gene, partial cds
ACCESSION HM056588
VERSION HM056588.1 GI:327458292
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1680)
Show all sequences for reference 1
AUTHORS Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
Sluis-Cremer,N. and Mellors,J.W.
CONSRTM AIDS Clinical Trials Group Study A5142 Protocol Team
TITLE Failure of initial therapy with two nucleosides and efavirenz is
not associated with early emergence of mutations in the C-terminus
of HIV-1 reverse transcriptase
JOURNAL J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2011)
PUBMED 21350368
REFERENCE 2 (bases 1 to 1680)
Show all sequences for reference 2
AUTHORS Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
Sluis-Cremer,N. and Mellors,J.W.
CONSRTM AIDS Clinical Trials Group Study A5142 Protocol Team
TITLE Direct Submission
JOURNAL Submitted (05-APR-2010) Division of Infectious Diseases, University
of Pittsburgh Department of Medicine, S818 Scaife Hall, 3550
Terrace St., Pittsburgh, PA 15261, USA
FEATURES Location/Qualifiers
source 1..1680
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="251904H"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="24-Jul-2003"
/note="subtype: B"
gene <1..>1680
/gene="pol"
CDS <1..>1680
/gene="pol"
/note="contains reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEA76586.1"
/db_xref="GI:327458293"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQ
KKSITVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPILLPEKDSWTVNDIQKLVGKLNWASQIYAGIKV
KQLCRLIKGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ
GQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLP
IQKEVWETWWTEYWQATWIPEWEYVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRET
KLGKAGYVTDXGXQKVVSXTDTTNQKTELQAIXLALQDSGSEVNIVTDSQYALGIIQA
QPDRSESELVSQIIEQLIKKEKVYLSWVPAHKGIGGNEQVDKLVSNGIRKIL"
BASE COUNT 675 a 277 c 358 g 357 t 13 other
ORIGIN
1 cccataagtc ctattgaaac tgtaccagta aaattraagc caggaatgga tggcccaaaa
61 gttaaacaat ggccmctgac agaagaaaaa ataaaggcat taatagaaat ttgtacagaa
121 atggaaaagg aagggaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta
181 tttgccataa agaaaaaaga cagtactaaa tggagaaaat tagtagattt cagagaactt
241 aataagagaa ctcaagactt ctgggaagtt caattaggaa taccacatcc cgcagggtta
301 aaacagaaaa aatcaataac agtactggat gtgggtgatg catatttttc agttccttta
361 gatgaagayt tcaggaagta tactgcattc accataccta gtataaacaa tgagacacca
421 gggattagat atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattc
481 caatgtagca tgacaaaaat cttagagccc tttagaaaac aaaatccaga catagttatc
541 tatcaataca tggatgattt gtatgtagga tctgacttag aaatagggca gcatagagca
601 aaaatagagg aactgagaga acatctgttg aggtgggggt ttaccacacc agacaaaaar
661 catcagaaag aacctccatt cctatggatg gggtatgaac tccatcctga caaatggaca
721 gtacagccta tactgctgcc agaaaaggac agctggactg tcaatgacat acagaagtta
781 gtgggaaaat tgaattgggc aagtcagatt tatgcaggra ttaaagtaaa gcaattatgt
841 agactcatta agggaaccaa agcactaaca gaagtagtac cactaacaga agaagcagag
901 ctagaactgg cagaaaatag ggarattcta aaagaaccag tacatggagt gtattatgac
961 ccatcaaaag acttaatagc agaaatacag aagcagggac aaggccagtg gacatatcaa
1021 atttatcaag agccatttaa aaatctgaaa acaggaaaat atgcaagaac aaggggtgcc
1081 cacacaaatg atgtaaaaca attaacagag gcagtgcaaa aaatagccac agaaagcata
1141 gtaatatggg gaaagactcc taaatttaga ctacccatac aaaaagaagt atgggaaaca
1201 tggtggacag agtattggca agccacctgg attcctgagt gggagtatgt caatacccct
1261 cccttagtaa aattatggta ccagttagag aaagaaccca tagtaggagc agaaactttc
1321 tatgtagatg grgcagctaa cagggaaaca aaattaggaa aagcaggata tgttactgac
1381 araggaarac aaaargttgt ctccytcact gacacaacaa atcagaagac tgagttacaa
1441 gcaattmatt tagctttgca ggattcgggg tcagaagtaa acatagtaac agactcwcaa
1501 tatgcattag ggatcattca agcacaacca gatagaagtg aatcagagtt agtcagtcaa
1561 ataatagagc agttaataaa aaaggaaaag gtctacctgt catgggtgcc agcacacaaa
1621 ggaattggag gcaatgaaca agtagacaaa ttagtcagta atggaatcag gaaaatatta
//
last modified: Tue May 31 10:56 2022