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LOCUS HM056570 1680 bp RNA linear VRL 09-APR-2011
DEFINITION HIV-1 isolate 111935L from USA pol protein (pol) gene, partial cds
ACCESSION HM056570
VERSION HM056570.1 GI:327458256
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1680)
Show all sequences for reference 1
AUTHORS Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
Sluis-Cremer,N. and Mellors,J.W.
CONSRTM AIDS Clinical Trials Group Study A5142 Protocol Team
TITLE Failure of initial therapy with two nucleosides and efavirenz is
not associated with early emergence of mutations in the C-terminus
of HIV-1 reverse transcriptase
JOURNAL J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2011)
PUBMED 21350368
REFERENCE 2 (bases 1 to 1680)
Show all sequences for reference 2
AUTHORS Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
Sluis-Cremer,N. and Mellors,J.W.
CONSRTM AIDS Clinical Trials Group Study A5142 Protocol Team
TITLE Direct Submission
JOURNAL Submitted (05-APR-2010) Division of Infectious Diseases, University
of Pittsburgh Department of Medicine, S818 Scaife Hall, 3550
Terrace St., Pittsburgh, PA 15261, USA
FEATURES Location/Qualifiers
source 1..1680
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="111935L"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="15-Dec-2005"
/note="subtype: B"
gene <1..>1680
/gene="pol"
CDS <1..>1680
/gene="pol"
/note="contains reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEA76568.1"
/db_xref="GI:327458257"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDQXFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFRKQNPEMVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
KQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGK
DQWTYQIYQEPFKNLKTGKYAKMXGAHTNDVKQLTEAVQKVAMESIVIWGKTPKFRLP
IQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRET
KLGKAGYVTDRGRQKVXSLTGTTNQKTELQAIHLALQDSGXEVNIVTDSQYALGIIQA
QPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL"
BASE COUNT 675 a 276 c 356 g 356 t 17 other
ORIGIN
1 cccattagtc ctattgaaac tgtaccagta aaattaaaac caggaatgga tggcccaaaa
61 gttaaacart ggccattgac agaagaaaaa ataaaagcat tagtagaaat ttgtacagaa
121 atggaaaagg aagggaaaat ttcaaaaatt gggcctgaaa atccatacaa yactccagta
181 tttgccataa agaaaaaaga cagtactaaa tggagaaaat tagtagattt cagagaactt
241 aacaagagga ctcaagactt ttgggaagtt caattgggaa taccacatcc cgcagggtta
301 aaaaagaaaa aatcagtaac agtactagat gtgggtgatg catatttttc agttccctta
361 gatcaagamt ttagraagta tactgcattt accataccta gtataaacaa tgagacacca
421 gggatcagat atcagtacaa tgtgctccca cagggatgga arggatcacc agcaatattc
481 caaagtagca tgacaaaaat attagagcct tttagaaaac aaaatccaga aatggtcatc
541 tatcaataca tggatgattt gtatgtagga tctgacttag aaatagggca gcatagaaca
601 aaaatagagg agctgagaca acatttgttg aggtggggat ttaccacacc agacaaaaaa
661 catcaaaagg aacctccatt cctttggatg ggttatgaac tccatcctga taaatggaca
721 gtacagccta tagagctgcc agaaaaagac agctggactg tcaatgacat acagaagtta
781 gtgggaaaac taaaytgggc aagtcagatt tacccaggga ttaaagtaaa gcagttatgt
841 aaacttctta ggggaaccaa agcactaaca gaagtaatac cactaacaga agaagcagag
901 ctagaactgg cagaaaacag ggagattcta aaagaaccag tacatggagt gtattatgac
961 ccatcaaaag acttaatagc agaaatacag aagcagggra aagaccaatg gacrtatcaa
1021 atttatcaag aaccatttaa aaatctgaar acaggaaaat atgcaaaaat gargggtgct
1081 cacactaatg atgtaaagca attaacagag gcagtgcaaa aggtagccat ggaaagcata
1141 gtaatatggg gaaagactcc caaatttaga ctacccatac aaaaagaaac atgggaagca
1201 tggtggacag agtattggca agccacmtgg attcctgaat gggagtttgt caacacccct
1261 cccttagtga aattatggta ccagctagar aaagagccca tagtaggagc agaaactttc
1321 tatgtagatg gggcatctaa yagggagact aaattaggaa aagcaggata tgttactgac
1381 agaggaagac aaaaagttrt ctccctgact ggyacaacaa atcagaagac tgagttacaa
1441 gcaattcatc tagccttgca agattcagga tyagaagtaa acatagtrac agactcacaa
1501 tatgcattag gaatcattca agcacaacca gataaaagtg aatcagagtt agtcaatcaa
1561 ataatagagc agttaataaa aaaggaaaag gtctacctgg catgggtacc agcacacaaa
1621 ggaattggag gaaatgaaca agtagataaa ttagtcagtg ctggaatcag gaaagtgcta
//
last modified: Tue May 31 10:56 2022