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LOCUS	    HM056570		    1680 bp    RNA     linear	VRL 09-APR-2011
DEFINITION  HIV-1 isolate 111935L from USA pol protein (pol) gene, partial cds
ACCESSION   HM056570
VERSION     HM056570.1 GI:327458256
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1680)
            Show all sequences for reference 1
  AUTHORS   Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
	    Sluis-Cremer,N. and Mellors,J.W.
  CONSRTM   AIDS Clinical Trials Group Study A5142 Protocol Team
  TITLE     Failure of initial therapy with two nucleosides and efavirenz is
	    not associated with early emergence of mutations in the C-terminus
	    of HIV-1 reverse transcriptase
  JOURNAL   J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2011)
  PUBMED    21350368
REFERENCE   2 (bases 1 to 1680)
            Show all sequences for reference 2
  AUTHORS   Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
	    Sluis-Cremer,N. and Mellors,J.W.
  CONSRTM   AIDS Clinical Trials Group Study A5142 Protocol Team
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2010) Division of Infectious Diseases, University
	    of Pittsburgh Department of Medicine, S818 Scaife Hall, 3550
	    Terrace St., Pittsburgh, PA 15261, USA
FEATURES             Location/Qualifiers
     source	     1..1680
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="111935L"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="15-Dec-2005"
		     /note="subtype: B"
     gene	     <1..>1680
		     /gene="pol"
     CDS	     <1..>1680
		     /gene="pol"
		     /note="contains reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEA76568.1"
		     /db_xref="GI:327458257"
		     /translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKE
		     GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLDQXFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
		     QSSMTKILEPFRKQNPEMVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
		     KQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGK
		     DQWTYQIYQEPFKNLKTGKYAKMXGAHTNDVKQLTEAVQKVAMESIVIWGKTPKFRLP
		     IQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRET
		     KLGKAGYVTDRGRQKVXSLTGTTNQKTELQAIHLALQDSGXEVNIVTDSQYALGIIQA
		     QPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL"
BASE COUNT	675 a	 276 c	  356 g    356 t     17 other
ORIGIN
       1 cccattagtc ctattgaaac tgtaccagta aaattaaaac caggaatgga tggcccaaaa 
      61 gttaaacart ggccattgac agaagaaaaa ataaaagcat tagtagaaat ttgtacagaa 
     121 atggaaaagg aagggaaaat ttcaaaaatt gggcctgaaa atccatacaa yactccagta 
     181 tttgccataa agaaaaaaga cagtactaaa tggagaaaat tagtagattt cagagaactt 
     241 aacaagagga ctcaagactt ttgggaagtt caattgggaa taccacatcc cgcagggtta 
     301 aaaaagaaaa aatcagtaac agtactagat gtgggtgatg catatttttc agttccctta 
     361 gatcaagamt ttagraagta tactgcattt accataccta gtataaacaa tgagacacca 
     421 gggatcagat atcagtacaa tgtgctccca cagggatgga arggatcacc agcaatattc 
     481 caaagtagca tgacaaaaat attagagcct tttagaaaac aaaatccaga aatggtcatc 
     541 tatcaataca tggatgattt gtatgtagga tctgacttag aaatagggca gcatagaaca 
     601 aaaatagagg agctgagaca acatttgttg aggtggggat ttaccacacc agacaaaaaa 
     661 catcaaaagg aacctccatt cctttggatg ggttatgaac tccatcctga taaatggaca 
     721 gtacagccta tagagctgcc agaaaaagac agctggactg tcaatgacat acagaagtta 
     781 gtgggaaaac taaaytgggc aagtcagatt tacccaggga ttaaagtaaa gcagttatgt 
     841 aaacttctta ggggaaccaa agcactaaca gaagtaatac cactaacaga agaagcagag 
     901 ctagaactgg cagaaaacag ggagattcta aaagaaccag tacatggagt gtattatgac 
     961 ccatcaaaag acttaatagc agaaatacag aagcagggra aagaccaatg gacrtatcaa 
    1021 atttatcaag aaccatttaa aaatctgaar acaggaaaat atgcaaaaat gargggtgct 
    1081 cacactaatg atgtaaagca attaacagag gcagtgcaaa aggtagccat ggaaagcata 
    1141 gtaatatggg gaaagactcc caaatttaga ctacccatac aaaaagaaac atgggaagca 
    1201 tggtggacag agtattggca agccacmtgg attcctgaat gggagtttgt caacacccct 
    1261 cccttagtga aattatggta ccagctagar aaagagccca tagtaggagc agaaactttc 
    1321 tatgtagatg gggcatctaa yagggagact aaattaggaa aagcaggata tgttactgac 
    1381 agaggaagac aaaaagttrt ctccctgact ggyacaacaa atcagaagac tgagttacaa 
    1441 gcaattcatc tagccttgca agattcagga tyagaagtaa acatagtrac agactcacaa 
    1501 tatgcattag gaatcattca agcacaacca gataaaagtg aatcagagtt agtcaatcaa 
    1561 ataatagagc agttaataaa aaaggaaaag gtctacctgg catgggtacc agcacacaaa 
    1621 ggaattggag gaaatgaaca agtagataaa ttagtcagtg ctggaatcag gaaagtgcta 
//
last modified: Tue May 31 10:56 2022


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