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LOCUS	    HM056559		    1680 bp    RNA     linear	VRL 09-APR-2011
DEFINITION  HIV-1 isolate 243747A from USA pol protein (pol) gene, partial cds
ACCESSION   HM056559
VERSION     HM056559.1 GI:327458234
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1680)
            Show all sequences for reference 1
  AUTHORS   Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
	    Sluis-Cremer,N. and Mellors,J.W.
  CONSRTM   AIDS Clinical Trials Group Study A5142 Protocol Team
  TITLE     Failure of initial therapy with two nucleosides and efavirenz is
	    not associated with early emergence of mutations in the C-terminus
	    of HIV-1 reverse transcriptase
  JOURNAL   J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2011)
  PUBMED    21350368
REFERENCE   2 (bases 1 to 1680)
            Show all sequences for reference 2
  AUTHORS   Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
	    Sluis-Cremer,N. and Mellors,J.W.
  CONSRTM   AIDS Clinical Trials Group Study A5142 Protocol Team
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2010) Division of Infectious Diseases, University
	    of Pittsburgh Department of Medicine, S818 Scaife Hall, 3550
	    Terrace St., Pittsburgh, PA 15261, USA
FEATURES             Location/Qualifiers
     source	     1..1680
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="243747A"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="12-Mar-2003"
		     /note="subtype: B"
     gene	     <1..>1680
		     /gene="pol"
     CDS	     <1..>1680
		     /gene="pol"
		     /note="contains reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEA76557.1"
		     /db_xref="GI:327458235"
		     /translation="PISPIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKE
		     GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
		     QSSMIKILEPFRKQNPDIVIYQYMDDLYVGSDLEIEQHRXKIEELRDHLLXWGXTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIXLPDKDSWTVNDIQKLVGKLNWASQIYAGIKV
		     RQLCKLIRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQ
		     GQWTYQIYQEPHKNLKTGKYAKMRGTHTNDVKQLTEAVQKVATESIVIWGKIPKFRLP
		     IQKDTWDVWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRET
		     KLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIXLALQDSGSEVNIVTDSQYALGIIQS
		     QPDKSESELVNQIIEQLINKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRRVL"
BASE COUNT	671 a	 265 c	  353 g    364 t     27 other
ORIGIN
       1 ccyattagtc ctattgatac tgtaccagtr aaattaaagc caggaatgga tggccctaaa 
      61 gttaaacaat ggccattgac agaagaaaaa ataaaagcat tagtagaaat ttgtacagaa 
     121 atggaaaagg aagggaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta 
     181 tttgccataa agaaaaaaga cagtactaaa tggagaaaat tagtagaytt cagagaacty 
     241 aacaagagaa ctcaagactt ctgggaagtt caattaggaa taccacatcc cgcagggttr 
     301 aaraagaaaa aatcagtaac agtactagat gtgggtgatg catatttctc agttccctta 
     361 gataaagaat tyagaaagta tactgcattt accataccta gtataaacaa tgagacacca 
     421 gggattagrt atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattc 
     481 caaagtagca tgataaaaat cttagagcct tttagaaaac aaaatccaga catagttatc 
     541 tatcaataca tggatgattt gtatgtagga tctgacttag aaatagaaca gcatagaaya 
     601 aaaatagagg aactgagaga ccatctrytg argtggggay ttaccacccc agacaaaaag 
     661 catcagaaag aaccaccatt cctttggatg ggttatgaac tccatcctga taaatggaca 
     721 gtacagccaa tartgctgcc agacaaagac agctggactg tcaatgacat acagaagtta 
     781 gtgggaaaat tgaattgggc aagtcagatt tatgcaggga ttaaagtgag gcaattatgt 
     841 aaactcatta gaggaaccaa agcaytaaca gaagtagtac cattaacaga rgaagcagag 
     901 ytagaactgg ctgagaacag ggagattcta aaagarccag tacatggagt gtattatgac 
     961 ccatcaaaag acttagtagc agaaatacag aaacargggc aaggccaatg gacatatcaa 
    1021 atttatcaag agccacataa aaatctgaaa acaggaaagt atgcaaaaat gaggggtacc 
    1081 catactaatg atgtaaaaca gttaacagag gcagtgcaaa aagtagccac agaaagcata 
    1141 gtaatatggg gaaagattcc taaatttaga ctacccatac aaaaagacac atgggatgta 
    1201 tggtggacag agtattggca agccacytgg attcctgagt gggagtttgt caatacccct 
    1261 cccttagtra aattatggta ccagttagag aaagaaccca tagtaggagc agaaactttc 
    1321 tatgtagatg gggcagctaa tagggagact aaattaggaa aagcaggata tgttactgac 
    1381 agrggaagac aaaaggttgt ytccctaact gayacaacaa atcagaagac tgagttacaa 
    1441 gcaattyatc tagctttgca ggattcagga tcagaagtaa acatagtaac agactcacaa 
    1501 tatgcattag gaatcattca atcacaacca gataaaagtg aatcagagtt agtyaatcaa 
    1561 ataatagagc agttaataaa taargaaaag atctacctgg catgggtacc agcacacaaa 
    1621 ggaattggag gaaatgaaca agtagataaa ttagtcagta atggaatcag gagagtacta 
//
last modified: Tue May 31 10:56 2022


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