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LOCUS HM056559 1680 bp RNA linear VRL 09-APR-2011
DEFINITION HIV-1 isolate 243747A from USA pol protein (pol) gene, partial cds
ACCESSION HM056559
VERSION HM056559.1 GI:327458234
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1680)
Show all sequences for reference 1
AUTHORS Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
Sluis-Cremer,N. and Mellors,J.W.
CONSRTM AIDS Clinical Trials Group Study A5142 Protocol Team
TITLE Failure of initial therapy with two nucleosides and efavirenz is
not associated with early emergence of mutations in the C-terminus
of HIV-1 reverse transcriptase
JOURNAL J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2011)
PUBMED 21350368
REFERENCE 2 (bases 1 to 1680)
Show all sequences for reference 2
AUTHORS Brehm,J.H., Lalama,C.M., Hughes,M.D., Haubrich,R., Riddler,S.A.,
Sluis-Cremer,N. and Mellors,J.W.
CONSRTM AIDS Clinical Trials Group Study A5142 Protocol Team
TITLE Direct Submission
JOURNAL Submitted (05-APR-2010) Division of Infectious Diseases, University
of Pittsburgh Department of Medicine, S818 Scaife Hall, 3550
Terrace St., Pittsburgh, PA 15261, USA
FEATURES Location/Qualifiers
source 1..1680
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="243747A"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="12-Mar-2003"
/note="subtype: B"
gene <1..>1680
/gene="pol"
CDS <1..>1680
/gene="pol"
/note="contains reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEA76557.1"
/db_xref="GI:327458235"
/translation="PISPIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMIKILEPFRKQNPDIVIYQYMDDLYVGSDLEIEQHRXKIEELRDHLLXWGXTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIXLPDKDSWTVNDIQKLVGKLNWASQIYAGIKV
RQLCKLIRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQ
GQWTYQIYQEPHKNLKTGKYAKMRGTHTNDVKQLTEAVQKVATESIVIWGKIPKFRLP
IQKDTWDVWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRET
KLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIXLALQDSGSEVNIVTDSQYALGIIQS
QPDKSESELVNQIIEQLINKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRRVL"
BASE COUNT 671 a 265 c 353 g 364 t 27 other
ORIGIN
1 ccyattagtc ctattgatac tgtaccagtr aaattaaagc caggaatgga tggccctaaa
61 gttaaacaat ggccattgac agaagaaaaa ataaaagcat tagtagaaat ttgtacagaa
121 atggaaaagg aagggaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta
181 tttgccataa agaaaaaaga cagtactaaa tggagaaaat tagtagaytt cagagaacty
241 aacaagagaa ctcaagactt ctgggaagtt caattaggaa taccacatcc cgcagggttr
301 aaraagaaaa aatcagtaac agtactagat gtgggtgatg catatttctc agttccctta
361 gataaagaat tyagaaagta tactgcattt accataccta gtataaacaa tgagacacca
421 gggattagrt atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattc
481 caaagtagca tgataaaaat cttagagcct tttagaaaac aaaatccaga catagttatc
541 tatcaataca tggatgattt gtatgtagga tctgacttag aaatagaaca gcatagaaya
601 aaaatagagg aactgagaga ccatctrytg argtggggay ttaccacccc agacaaaaag
661 catcagaaag aaccaccatt cctttggatg ggttatgaac tccatcctga taaatggaca
721 gtacagccaa tartgctgcc agacaaagac agctggactg tcaatgacat acagaagtta
781 gtgggaaaat tgaattgggc aagtcagatt tatgcaggga ttaaagtgag gcaattatgt
841 aaactcatta gaggaaccaa agcaytaaca gaagtagtac cattaacaga rgaagcagag
901 ytagaactgg ctgagaacag ggagattcta aaagarccag tacatggagt gtattatgac
961 ccatcaaaag acttagtagc agaaatacag aaacargggc aaggccaatg gacatatcaa
1021 atttatcaag agccacataa aaatctgaaa acaggaaagt atgcaaaaat gaggggtacc
1081 catactaatg atgtaaaaca gttaacagag gcagtgcaaa aagtagccac agaaagcata
1141 gtaatatggg gaaagattcc taaatttaga ctacccatac aaaaagacac atgggatgta
1201 tggtggacag agtattggca agccacytgg attcctgagt gggagtttgt caatacccct
1261 cccttagtra aattatggta ccagttagag aaagaaccca tagtaggagc agaaactttc
1321 tatgtagatg gggcagctaa tagggagact aaattaggaa aagcaggata tgttactgac
1381 agrggaagac aaaaggttgt ytccctaact gayacaacaa atcagaagac tgagttacaa
1441 gcaattyatc tagctttgca ggattcagga tcagaagtaa acatagtaac agactcacaa
1501 tatgcattag gaatcattca atcacaacca gataaaagtg aatcagagtt agtyaatcaa
1561 ataatagagc agttaataaa taargaaaag atctacctgg catgggtacc agcacacaaa
1621 ggaattggag gaaatgaaca agtagataaa ttagtcagta atggaatcag gagagtacta
//
last modified: Tue May 31 10:56 2022