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LOCUS HM026328 672 bp RNA linear VRL 08-JUN-2011
DEFINITION HIV-1 isolate 01_AE.KH05-0656RT(Q0504105) from Cambodia reverse
transcriptase (pol) gene, partial cds
ACCESSION HM026328
VERSION HM026328.1 GI:297595250
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 672)
Show all sequences for reference 1
AUTHORS Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
Nerrienet,E.
TITLE High efficacy of lopinavir/r-based second-line antiretroviral
treatment after 24 months of follow up at ESTHER/Calmette Hospital
in Phnom Penh, Cambodia.
JOURNAL J Int AIDS Soc. 2011 Mar 26;14:14.
PUBMED 21439074
REFERENCE 2 (bases 1 to 672)
Show all sequences for reference 2
AUTHORS Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
Nerrienet,E.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2010) HIV/Hepatitis Laboratory, Institut Pasteur
du Cambodge, 5, Monivong Blvd, Phnom Penh BP983, Cambodia
FEATURES Location/Qualifiers
source 1..672
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="01_AE.KH05-0656RT(Q0504105)"
/isolation_source="plasma of HIV-1 infected and ARV
treated patient"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cambodia"
/collection_date="04-May-2006"
/note="genotype: CRF01_AE"
gene <1..>672
/gene="pol"
CDS <1..>672
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="ADI48146.1"
/db_xref="GI:297595251"
/translation="MDGPKVKQWPLTEEKIKALTEICEELEKEGKISKIGPENPYNTP
VFAIKKKNSTRWRKIVDFRELNKRTQDFWEVQLGIPHPGGLKKKKSITVLDVGDAYFS
VPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRTKN
PEMIIYQYVDDLYVSSDLEIEQHRTKIKELRAYLLSWGFFTPDQKHQQEPPYHWMGYE
LHPDRW"
BASE COUNT 266 a 110 c 140 g 155 t 1 other
ORIGIN
1 atggatggac caaaggttaa acagtggcca ttgacagaag aaaaaataaa agcattaaca
61 gaaatttgtg aggagytgga gaaggaagga aaaatctcaa aaattgggcc tgaaaatcca
121 tacaatactc cagtatttgc tataaagaaa aagaacagca ccagatggag gaaaatagta
181 gatttcagag agctcaataa aagaactcag gacttttggg aagtccaatt aggaatacca
241 catccaggag gtttaaaaaa gaaaaaatca ataactgtac tagatgtggg agatgcatat
301 ttttcagttc ctttagatga aagctttaga aagtatactg cattcaccat acctagtata
361 aacaatgaga caccaggaat cagatatcag tacaatgtgc tgccacaggg atggaaagga
421 tcaccggcaa tattccagta tagcatgaca aaaatcttag agccctttag aacaaaaaat
481 ccagaaatga ttatctatca gtacgtggat gacttgtatg tatcatctga tttagaaata
541 gagcagcaca gaacaaaaat aaaggagcta agagcttatc tattgagctg gggatttttt
601 acaccagacc aaaagcatca gcaggaacct ccatatcatt ggatgggata tgaactccat
661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022