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LOCUS	    HM026328		     672 bp    RNA     linear	VRL 08-JUN-2011
DEFINITION  HIV-1 isolate 01_AE.KH05-0656RT(Q0504105) from Cambodia reverse
	    transcriptase (pol) gene, partial cds
ACCESSION   HM026328
VERSION     HM026328.1 GI:297595250
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 672)
            Show all sequences for reference 1
  AUTHORS   Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
	    Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
	    Nerrienet,E.
  TITLE     High efficacy of lopinavir/r-based second-line antiretroviral
	    treatment after 24 months of follow up at ESTHER/Calmette Hospital
	    in Phnom Penh, Cambodia.
  JOURNAL   J Int AIDS Soc. 2011 Mar 26;14:14.
  PUBMED    21439074
REFERENCE   2 (bases 1 to 672)
            Show all sequences for reference 2
  AUTHORS   Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
	    Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
	    Nerrienet,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2010) HIV/Hepatitis Laboratory, Institut Pasteur
	    du Cambodge, 5, Monivong Blvd, Phnom Penh BP983, Cambodia
FEATURES             Location/Qualifiers
     source	     1..672
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="01_AE.KH05-0656RT(Q0504105)"
		     /isolation_source="plasma of HIV-1 infected and ARV
		     treated patient"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cambodia"
		     /collection_date="04-May-2006"
		     /note="genotype: CRF01_AE"
     gene	     <1..>672
		     /gene="pol"
     CDS	     <1..>672
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="ADI48146.1"
		     /db_xref="GI:297595251"
		     /translation="MDGPKVKQWPLTEEKIKALTEICEELEKEGKISKIGPENPYNTP
		     VFAIKKKNSTRWRKIVDFRELNKRTQDFWEVQLGIPHPGGLKKKKSITVLDVGDAYFS
		     VPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRTKN
		     PEMIIYQYVDDLYVSSDLEIEQHRTKIKELRAYLLSWGFFTPDQKHQQEPPYHWMGYE
		     LHPDRW"
BASE COUNT	266 a	 110 c	  140 g    155 t      1 other
ORIGIN
       1 atggatggac caaaggttaa acagtggcca ttgacagaag aaaaaataaa agcattaaca 
      61 gaaatttgtg aggagytgga gaaggaagga aaaatctcaa aaattgggcc tgaaaatcca 
     121 tacaatactc cagtatttgc tataaagaaa aagaacagca ccagatggag gaaaatagta 
     181 gatttcagag agctcaataa aagaactcag gacttttggg aagtccaatt aggaatacca 
     241 catccaggag gtttaaaaaa gaaaaaatca ataactgtac tagatgtggg agatgcatat 
     301 ttttcagttc ctttagatga aagctttaga aagtatactg cattcaccat acctagtata 
     361 aacaatgaga caccaggaat cagatatcag tacaatgtgc tgccacaggg atggaaagga 
     421 tcaccggcaa tattccagta tagcatgaca aaaatcttag agccctttag aacaaaaaat 
     481 ccagaaatga ttatctatca gtacgtggat gacttgtatg tatcatctga tttagaaata 
     541 gagcagcaca gaacaaaaat aaaggagcta agagcttatc tattgagctg gggatttttt 
     601 acaccagacc aaaagcatca gcaggaacct ccatatcatt ggatgggata tgaactccat 
     661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022


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