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LOCUS	    HM026327		     672 bp    RNA     linear	VRL 08-JUN-2011
DEFINITION  HIV-1 isolate 01_AE.KH03-0554RT(O0130120) from Cambodia reverse
	    transcriptase (pol) gene, partial cds
ACCESSION   HM026327
VERSION     HM026327.1 GI:297595248
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 672)
            Show all sequences for reference 1
  AUTHORS   Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
	    Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
	    Nerrienet,E.
  TITLE     High efficacy of lopinavir/r-based second-line antiretroviral
	    treatment after 24 months of follow up at ESTHER/Calmette Hospital
	    in Phnom Penh, Cambodia.
  JOURNAL   J Int AIDS Soc. 2011 Mar 26;14:14.
  PUBMED    21439074
REFERENCE   2 (bases 1 to 672)
            Show all sequences for reference 2
  AUTHORS   Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
	    Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
	    Nerrienet,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2010) HIV/Hepatitis Laboratory, Institut Pasteur
	    du Cambodge, 5, Monivong Blvd, Phnom Penh BP983, Cambodia
FEATURES             Location/Qualifiers
     source	     1..672
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="01_AE.KH03-0554RT(O0130120)"
		     /isolation_source="plasma of HIV-1 infected and ARV
		     treated patient"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cambodia"
		     /collection_date="Sep-2004"
		     /note="genotype: CRF01_AE"
     gene	     <1..>672
		     /gene="pol"
     CDS	     <1..>672
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="ADI48145.1"
		     /db_xref="GI:297595249"
		     /translation="MDGPKVKQWPLTEEKIKALTEICKELEEEGKISKIGPENPYNTP
		     VFAIKKKDSTKWRKLMDFRELNKRTQDFWEVQLGIPHPXGLKKNKSVTVLDVGDAYFS
		     VPLDESFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKN
		     PEMVIYQYVDDLYVGSDLEIGQHRTKIEELRAHLWSWGFYTPDKKHQKEHPFLWMGYE
		     LHPDRW"
BASE COUNT	267 a	 111 c	  143 g    149 t      2 other
ORIGIN
       1 atggatggac caaaggttaa acagtggcca ttgacagaag aaaaaataaa agcattaaca 
      61 gaaatttgta aagaattgga agaggaagga aaaatctcaa aaattgggcc tgaaaatcca 
     121 tacaataccc cagtatttgc tataaagaaa aaagacagca ccaaatggag gaagttaatg 
     181 gatttcagag agctcaataa aagaactcag gacttttggg aagttcaatt aggaataccg 
     241 catccagsag ggttaaaaaa gaayaaatca gtaacagtac tagatgtggg agatgcatat 
     301 ttttcagttc ctttagatga aagctttaga aagtatactg cattcaccat acctagtcta 
     361 aacaatgaga caccaggaat cagataccag tacaatgtgc tgccacaggg atggaaagga 
     421 tcaccagcaa tattccaaag tagcatgaca aaaatcttag agccctttag aataaaaaac 
     481 ccagaaatgg ttatctatca atacgtggat gacttgtatg taggatctga tttagaaata 
     541 ggacagcaca gaacaaaaat agaggagcta agagctcacc tatggagctg gggattttat 
     601 acgccagaca aaaagcatca gaaggaacat ccattccttt ggatgggata tgaactccat 
     661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022


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