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LOCUS HM026327 672 bp RNA linear VRL 08-JUN-2011
DEFINITION HIV-1 isolate 01_AE.KH03-0554RT(O0130120) from Cambodia reverse
transcriptase (pol) gene, partial cds
ACCESSION HM026327
VERSION HM026327.1 GI:297595248
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 672)
Show all sequences for reference 1
AUTHORS Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
Nerrienet,E.
TITLE High efficacy of lopinavir/r-based second-line antiretroviral
treatment after 24 months of follow up at ESTHER/Calmette Hospital
in Phnom Penh, Cambodia.
JOURNAL J Int AIDS Soc. 2011 Mar 26;14:14.
PUBMED 21439074
REFERENCE 2 (bases 1 to 672)
Show all sequences for reference 2
AUTHORS Ferradini,L., Ouk,V., Segeral,O., Nouhin,J., Dulioust,A., Hak,C.,
Fournier,I., Lerolle,N., Ngin,S., Mean,C.V., Delfraissy,J.-F. and
Nerrienet,E.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2010) HIV/Hepatitis Laboratory, Institut Pasteur
du Cambodge, 5, Monivong Blvd, Phnom Penh BP983, Cambodia
FEATURES Location/Qualifiers
source 1..672
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="01_AE.KH03-0554RT(O0130120)"
/isolation_source="plasma of HIV-1 infected and ARV
treated patient"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cambodia"
/collection_date="Sep-2004"
/note="genotype: CRF01_AE"
gene <1..>672
/gene="pol"
CDS <1..>672
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="ADI48145.1"
/db_xref="GI:297595249"
/translation="MDGPKVKQWPLTEEKIKALTEICKELEEEGKISKIGPENPYNTP
VFAIKKKDSTKWRKLMDFRELNKRTQDFWEVQLGIPHPXGLKKNKSVTVLDVGDAYFS
VPLDESFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKN
PEMVIYQYVDDLYVGSDLEIGQHRTKIEELRAHLWSWGFYTPDKKHQKEHPFLWMGYE
LHPDRW"
BASE COUNT 267 a 111 c 143 g 149 t 2 other
ORIGIN
1 atggatggac caaaggttaa acagtggcca ttgacagaag aaaaaataaa agcattaaca
61 gaaatttgta aagaattgga agaggaagga aaaatctcaa aaattgggcc tgaaaatcca
121 tacaataccc cagtatttgc tataaagaaa aaagacagca ccaaatggag gaagttaatg
181 gatttcagag agctcaataa aagaactcag gacttttggg aagttcaatt aggaataccg
241 catccagsag ggttaaaaaa gaayaaatca gtaacagtac tagatgtggg agatgcatat
301 ttttcagttc ctttagatga aagctttaga aagtatactg cattcaccat acctagtcta
361 aacaatgaga caccaggaat cagataccag tacaatgtgc tgccacaggg atggaaagga
421 tcaccagcaa tattccaaag tagcatgaca aaaatcttag agccctttag aataaaaaac
481 ccagaaatgg ttatctatca atacgtggat gacttgtatg taggatctga tttagaaata
541 ggacagcaca gaacaaaaat agaggagcta agagctcacc tatggagctg gggattttat
601 acgccagaca aaaagcatca gaaggaacat ccattccttt ggatgggata tgaactccat
661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022