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LOCUS HM014324 2490 bp DNA linear VRL 01-JUN-2010
DEFINITION HIV-1 isolate NA20_LN14 from United Kingdom envelope glycoprotein
(env) gene, partial cds
ACCESSION HM014324
VERSION HM014324.1 GI:296933109
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2490)
Show all sequences for reference 1
AUTHORS Peters,P.J., Bhattacharya,J., Hibbitts,S., Dittmar,M.T.,
Simmons,G., Bell,J., Simmonds,P. and Clapham,P.R.
TITLE Biological Analysis of Human Immunodeficiency Virus Type 1 R5
Envelopes Amplified from Brain and Lymph Node Tissues of AIDS
Patients with Neuropathology Reveals Two Distinct Tropism
Phenotypes and Identifies Envelopes in the Brain That Confer an
Enhanced Tropism and Fusigenicity for Macrophages
JOURNAL J. Virol. 78 (13), 6915-6926 (2004)
PUBMED 15194768
REFERENCE 2 (bases 1 to 2490)
Show all sequences for reference 2
AUTHORS Peters,P.J., Bhattacharya,J., Hibbitts,S., Dittmar,M.T.,
Simmons,G., Bell,J., Simmonds,P. and Clapham,P.R.
TITLE Direct Submission
JOURNAL Submitted (18-MAR-2010) Program in Molecular Medicine and Dept of
Molecular Genetics and Microbiology, University of Massachusetts
Medical School, 373 Plantation Street Biotech II Suite 315,
Worcester, MA 01605, USA
FEATURES Location/Qualifiers
source 1..2490
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="NA20_LN14"
/isolation_source="patient NA20"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="United Kingdom"
/note="subtype: B"
gene <1..>2490
/gene="env"
CDS <1..>2490
/gene="env"
/note="from kpn1 site upstream of gp120 to end of gp41"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADH93670.1"
/db_xref="GI:296933110"
/translation="PVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVL
VNVTEDFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTDWRRNATTNATA
ITTATPSSRGETLEGGEMKNCSFNITTSIRDKVKKEYALFYSLDVVPIENSNTSYRLI
SCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFSGKGSCKNVSTVQCTHGIR
PVVATQLRLNGSLAEEEVVIRSDNFTDNIKNIIVQLNESVEINCTRPSNNTRKSIHLG
PGSALYATGAITGDIRQAHCNISRAKWNNTLGQIVIKLREQVREQFKNKTIETIVFNQ
SSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNVNSTWNGTEGSNNTEGNDTITLQCR
IKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLILTRDGGNDNTTTETFRPGGGNMRD
NWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGGAMFLGFLGAAGSTMGAAS
LTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQL
LGIWGCSGKLICTTTVPWNTSWSNRSQEEIWGNLTWMQWEKEIDNYTSLIYTLIEQSQ
NQQEKNEQELLELDKWANLWNWFSITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRV
RQGYSPLSFQIRPPAPRGPDRPEGIEEEGGERDRDRSGPLVDGFLAIIWVDLRSLCLF
SYHRLRDFLLIVTRIVELLGRRGWELLKYWWNLLQYWSQELKNSAISLLNAIAITVAE
VTDRVIEVVQRAYRAILHIPTRIRQGLERALL"
BASE COUNT 859 a 434 c 593 g 604 t
ORIGIN
1 cctgtgtgga aagaagccac caccactcta ttttgtgcat cagatgctaa agcatatgat
61 acagaggtcc ataatgtttg ggccacacat gcctgtgtac ccacagaccc caacccacaa
121 gaagtagtat tggtgaatgt gacagaagat tttaacatgt ggaaaaataa catggtagaa
181 cagatgcatg aggatataat tagtttatgg gatcaaagcc taaaaccatg tgtaaaatta
241 accccacttt gtgttacttt gcattgcact gattggagga ggaatgccac tactaatgcc
301 actgctatca ccactgctac ccctagtagt aggggggaaa cgctggaggg aggagaaatg
361 aaaaattgct ctttcaatat caccacaagc ataagagata aggtgaagaa agaatatgct
421 cttttttata gtcttgatgt agtaccaata gaaaatagta atactagcta taggttgata
481 agttgtaata cctcagtcat tacacaggcc tgtccaaagg tatcctttga gccaattccc
541 atacattatt gtgccccggc tggttttgcg attctaaagt gtaatgataa gaagttcagt
601 ggaaaaggat catgtaaaaa tgtcagcaca gtacagtgta cacatggaat taggccagta
661 gtggcaactc aactgcggtt aaatggcagt ttagcagaag aagaggtagt aattagatcc
721 gacaatttca cggacaatat taaaaacata atagtacagc tgaatgaatc tgtagaaatt
781 aattgtacaa gacccagcaa caatacaaga aaaagtatac atctaggacc aggcagtgca
841 ctttatgcaa caggagcaat aacaggagat ataagacaag cacattgtaa cattagtaga
901 gcaaaatgga ataacacttt aggacagata gttataaagt taagagaaca agtaagagaa
961 caatttaaga ataaaacaat agaaacaata gtctttaatc aatcctcagg aggggaccca
1021 gaaattgtaa tgcacagttt taattgtgga ggggaatttt tctactgtaa tacaacacaa
1081 ctatttaata gtacttggaa tgttaatagt acttggaatg gtactgaagg gtcaaataac
1141 actgaaggaa atgacacaat cacactccaa tgcagaataa aacaaattat aaacatgtgg
1201 caggaagtag gaaaagcaat gtatgcccct cccatcaggg gacaaattag gtgttcgtca
1261 aatattacag ggctgatatt aacaagagat ggtggtaatg ataataccac cacagagacc
1321 ttcagacctg gaggaggaaa tatgagggac aattggagaa gtgaattata taaatataaa
1381 gtagtaaaaa ttgaaccatt aggagtagca cccaccaagg caaagagaag agtggtgcag
1441 agagaaaaaa gagcagtggg aataggagga gcgatgttcc ttgggttctt gggagcagca
1501 ggaagcacta tgggcgcagc gtcactgacg ctgacggtac aggccagaca attattgtct
1561 ggtatagtgc aacagcagaa caatttgctg agggctattg aggcgcaaca gcatctgttg
1621 caactcacag tctggggcat caagcagctc caggcaagag tcctggctgt agaaagatac
1681 ctacaggatc aacagctcct ggggatttgg ggttgctctg gaaaactcat ctgcaccacc
1741 actgtgcctt ggaatactag ttggagtaat agatctcagg aggagatttg gggcaatttg
1801 acctggatgc agtgggaaaa ggaaattgat aattacacaa gcttaatata caccttaatt
1861 gaacaatcgc aaaaccaaca agaaaagaat gaacaagaat tattggaatt agataaatgg
1921 gcaaatttgt ggaattggtt tagcataaca aactggctgt ggtatataaa aatattcata
1981 atgatagtag gaggcttgat aggtttaaga atagtttttg ctgtactttc tatagtgaat
2041 agagttaggc agggatactc accattgtcg ttccagatcc gccccccagc tccaagggga
2101 cccgacaggc ccgaaggaat cgaagaagaa ggtggagaga gagacagaga cagatccggt
2161 ccattagtgg atggattctt agcaattatc tgggtcgacc tgcggagcct gtgcctcttc
2221 agctaccacc gcttgagaga ctttctcttg attgtaacga ggattgtgga acttctggga
2281 cgcagggggt gggaactcct caaatattgg tggaatctcc tccagtattg gagtcaggaa
2341 ctaaagaata gtgctattag cttgcttaat gccatagcca taacagtagc tgaggtgact
2401 gatagggtta tagaagtagt acaaagagct tacagggcta ttctccatat acctacacga
2461 ataagacagg gcttggaaag ggctttgcta
//
last modified: Tue May 31 10:56 2022