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LOCUS HM001456 1260 bp DNA linear VRL 17-MAY-2010
DEFINITION HIV-1 isolate AM2739 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION HM001456
VERSION HM001456.1 GI:295984604
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1260)
Show all sequences for reference 1
AUTHORS Lamers,S.L., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
McGrath,M.S.
TITLE Extensive HIV-1 intra-host recombination is common in tissues with
abnormal histopathology
JOURNAL PLoS ONE 4 (3), E5065 (2009)
PUBMED 19333384
REFERENCE 2 (bases 1 to 1260)
Show all sequences for reference 2
AUTHORS Lamers,S., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
McGrath,M.S.
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2010) Department of Medicine, University of
California at San Francisco, 1001 Potrero Ave, San Francisco, CA
94110, USA
FEATURES Location/Qualifiers
source 1..1260
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="AM2739"
/isolation_source="normal-diaphragm from frozen autopsy
tissue"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1260
/gene="env"
CDS <1..>1260
/gene="env"
/note="gp120"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADG63757.1"
/db_xref="GI:295984605"
/translation="KNNMVEQMQEDVISLWDQSLKPCVKLTPLCVTLDCTNATVTNET
NSNGNNGTNNKGNFTIEEVKNCSFNITTSIRDKVQKEYALFYKIDIVPIDDDETYNRT
SNNKTRRYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGTGPCKN
VSTVQCTHGIKPVVSTQLLLNGSLAEEGVVIRSENFTNNAKIIIVQLNKSVKINCTRP
GNNTRKSIHIGPGRAFYTTGEIIGDIRKAHCKINGTEWNNTLKQIAAKLGEQFGNNKT
IAFNQSSGGDPEIVSHSFNCGGEFFYCDTAQLFNSTWSNINGTWNSNGTWNSTAGSNN
TITLPCRIKQIINMWQEVGKAMYAPPIRGNISCSSIITGLLLTRDGGNGNNSNGTETF
RPGGGDMRDNWRSELYKYKVVKIEPLGI"
BASE COUNT 500 a 188 c 256 g 316 t
ORIGIN
1 aaaaataaca tggtagaaca gatgcaggag gatgtaatta gtttatggga tcaaagccta
61 aagccatgtg taaaattaac cccactctgt gttactttag attgcactaa cgcaactgtt
121 actaatgaaa ctaatagtaa cgggaataat ggaactaata ataaagggaa ctttactata
181 gaagaagtaa aaaactgctc tttcaatatc accacaagca taagagataa ggtgcagaaa
241 gaatatgcat tgttttataa aattgatata gtaccaatag atgatgatga gacctataat
301 agaaccagta ataataagac cagaagatat aggttgataa gttgtaacac ctcagtcatt
361 acacaggcct gtccaaaggt aacctttgag ccaattccca tacattattg tgccccggct
421 ggttttgcta ttctaaagtg taacaataag acgttcaatg gaacaggacc atgtaaaaat
481 gtcagcacag tacaatgtac acatggaatt aagccagtgg tatcaactca actactgtta
541 aatggcagtc tagcagaaga gggggtagta attagatctg aaaattttac aaacaatgct
601 aaaatcataa tagtacagct gaataaatct gtaaaaatta attgtacaag accaggcaac
661 aatacaagaa agagtataca tataggacca gggagagcat tttatacaac aggagaaata
721 ataggagata taagaaaagc acattgtaaa attaatggaa cagaatggaa caacacttta
781 aaacagatag ctgcaaaatt aggagaacaa tttgggaata ataaaacaat agcctttaat
841 caatcctcag gaggggaccc agaaattgta agccacagtt ttaattgtgg aggggaattt
901 ttctactgtg atacagcaca actgtttaat agtacttgga gtaatattaa tggtacttgg
961 aatagtaatg gtacttggaa tagtactgca gggtcaaata acactatcac actcccatgc
1021 agaataaaac agattataaa catgtggcag gaagtaggaa aggcaatgta tgcccctccc
1081 atcagaggaa acattagctg ttcatcaatt attacagggc tgttattaac aagagatggt
1141 ggtaatggta acaacagtaa cgggactgag accttcagac ctggaggagg agatatgagg
1201 gacaattgga gaagtgaatt atataaatat aaagtagtaa aaattgaacc attaggaata
//
last modified: Tue May 31 10:56 2022