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LOCUS HM001421 1236 bp DNA linear VRL 17-MAY-2010
DEFINITION HIV-1 isolate AM1023T from USA envelope glycoprotein-like (env)
gene, partial sequence
ACCESSION HM001421
VERSION HM001421.1 GI:295984542
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1236)
Show all sequences for reference 1
AUTHORS Lamers,S.L., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
McGrath,M.S.
TITLE Extensive HIV-1 intra-host recombination is common in tissues with
abnormal histopathology
JOURNAL PLoS ONE 4 (3), E5065 (2009)
PUBMED 19333384
REFERENCE 2 (bases 1 to 1236)
Show all sequences for reference 2
AUTHORS Lamers,S., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
McGrath,M.S.
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2010) Department of Medicine, University of
California at San Francisco, 1001 Potrero Ave, San Francisco, CA
94110, USA
FEATURES Location/Qualifiers
source 1..1236
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="AM1023T"
/isolation_source="liver-with-tumor from frozen autopsy
tissue"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1236
/gene="env"
misc_feature <1..>1236
/gene="env"
/note="similar to envelope glycoprotein; gp120"
BASE COUNT 486 a 190 c 245 g 315 t
ORIGIN
1 aaaaataaca tggtagaaca gatgcaggag gatgtaatta gtttatggga tcaaagccta
61 aagccatgtg taaaattaac cccactctgt gttactttag ggtgcactaa cgcgactgct
121 attaataaaa cttgtagtac taacaggact aataatcaga attgtagctt tactatggaa
181 gaagtaaaaa actgctcttt caatatcacc acaagcataa gagataaggt gcagaaagaa
241 tatgcattgt tttataaaat tgatatagta ccaatagatg atgatgagac ctgtaatagc
301 accattaata ataagaccag aagatatagg ttgataagtt gtaacacctc agtcattaca
361 caggcctgtc caaaggtaac ctttgagcca attcccatac attattgtgc cccggctggt
421 tttgctattc taaagtgtaa caataagacg ttcaatggaa caggaccatg taaaaatgtc
481 agcacagtac aatgtacaca tggaattaag ccagtggtat caactcaact gctgttaaat
541 ggcagtctag cagaaaagga ggtagtaatt agatctgaaa atttcacaaa caatgctaaa
601 atcataatag tacagctgga taaatttgta aaaattaatt gtacaagacc aggtaacaat
661 acaagaaaaa gtatacatat aggaccaggg agagcatttt atacaacagg agaaataata
721 ggagatataa gacaagcaca ttgtaacatt agtggagcag aatagaacaa cactttaaaa
781 cagatagttc aaaaattagg agaacaattt gggaataata aaacaatctt tactcaatcc
841 tcaggagggg acccagaaat tgtaatgcac agttttaatt gtggaggaga atttttctac
901 tgtaatacat cacaactgtt taatagtact cggaataata ataatggtac ttggaatagt
961 actgcagggt caaataacac tatcatactc ccatgcagaa taaaacaaat tataaacatg
1021 tggcaggaag taggaaaagc aatgtatgcc cctcccatca gcggaaacat tagctgttca
1081 tcaaatatta cagggctgct attaacaaga gatggtggta atggtaatag cagtaacggg
1141 actgagatct tcagacctgg aggaggagat atgagggaca attggagaag tgaattatat
1201 aaatacaaag tagtaaaaat tgaaccatta ggaata
//
last modified: Tue May 31 10:56 2022