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LOCUS	    HM001421		    1236 bp    DNA     linear	VRL 17-MAY-2010
DEFINITION  HIV-1 isolate AM1023T from USA envelope glycoprotein-like (env)
	    gene, partial sequence
ACCESSION   HM001421
VERSION     HM001421.1 GI:295984542
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1236)
            Show all sequences for reference 1
  AUTHORS   Lamers,S.L., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
	    Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
	    McGrath,M.S.
  TITLE     Extensive HIV-1 intra-host recombination is common in tissues with
	    abnormal histopathology
  JOURNAL   PLoS ONE 4 (3), E5065 (2009)
  PUBMED    19333384
REFERENCE   2 (bases 1 to 1236)
            Show all sequences for reference 2
  AUTHORS   Lamers,S., Salemi,M., Galligan,D.C., de Oliveira,T., Fogel,G.B.,
	    Granier,S.C., Zhao,L., Brown,J.N., Morris,A., Masliah,E. and
	    McGrath,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2010) Department of Medicine, University of
	    California at San Francisco, 1001 Potrero Ave, San Francisco, CA
	    94110, USA
FEATURES             Location/Qualifiers
     source	     1..1236
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="AM1023T"
		     /isolation_source="liver-with-tumor from frozen autopsy
		     tissue"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>1236
		     /gene="env"
     misc_feature    <1..>1236
		     /gene="env"
		     /note="similar to envelope glycoprotein; gp120"
BASE COUNT	486 a	 190 c	  245 g    315 t
ORIGIN
       1 aaaaataaca tggtagaaca gatgcaggag gatgtaatta gtttatggga tcaaagccta 
      61 aagccatgtg taaaattaac cccactctgt gttactttag ggtgcactaa cgcgactgct 
     121 attaataaaa cttgtagtac taacaggact aataatcaga attgtagctt tactatggaa 
     181 gaagtaaaaa actgctcttt caatatcacc acaagcataa gagataaggt gcagaaagaa 
     241 tatgcattgt tttataaaat tgatatagta ccaatagatg atgatgagac ctgtaatagc 
     301 accattaata ataagaccag aagatatagg ttgataagtt gtaacacctc agtcattaca 
     361 caggcctgtc caaaggtaac ctttgagcca attcccatac attattgtgc cccggctggt 
     421 tttgctattc taaagtgtaa caataagacg ttcaatggaa caggaccatg taaaaatgtc 
     481 agcacagtac aatgtacaca tggaattaag ccagtggtat caactcaact gctgttaaat 
     541 ggcagtctag cagaaaagga ggtagtaatt agatctgaaa atttcacaaa caatgctaaa 
     601 atcataatag tacagctgga taaatttgta aaaattaatt gtacaagacc aggtaacaat 
     661 acaagaaaaa gtatacatat aggaccaggg agagcatttt atacaacagg agaaataata 
     721 ggagatataa gacaagcaca ttgtaacatt agtggagcag aatagaacaa cactttaaaa 
     781 cagatagttc aaaaattagg agaacaattt gggaataata aaacaatctt tactcaatcc 
     841 tcaggagggg acccagaaat tgtaatgcac agttttaatt gtggaggaga atttttctac 
     901 tgtaatacat cacaactgtt taatagtact cggaataata ataatggtac ttggaatagt 
     961 actgcagggt caaataacac tatcatactc ccatgcagaa taaaacaaat tataaacatg 
    1021 tggcaggaag taggaaaagc aatgtatgcc cctcccatca gcggaaacat tagctgttca 
    1081 tcaaatatta cagggctgct attaacaaga gatggtggta atggtaatag cagtaacggg 
    1141 actgagatct tcagacctgg aggaggagat atgagggaca attggagaag tgaattatat 
    1201 aaatacaaag tagtaaaaat tgaaccatta ggaata
//
last modified: Tue May 31 10:56 2022


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