HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    HG529958		    1761 bp    RNA     linear	VRL 18-OCT-2013
DEFINITION  HIV-1 M:CRF06_cpx partial pol gene for polyprotein, protease and
	    partial reverse transcriptase region, isolate SR0046-1061-23
ACCESSION   HG529958
VERSION     HG529958.1 GI:550593850
KEYWORDS    .
SOURCE	    HIV-1 M:CRF06_cpx
  ORGANISM  HIV-1 M:CRF06_cpx Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Somda,A., Sangare,L., Soro,M., Yameogo,S., Bazie,B., Bigirimana,F.,
	    Bertagnolio,S., Peeters,M., Mouacha,F., Rivera,A.M., Jordan,M.R.
	    and Sanou,M.J.
  TITLE     Surveillance of transmitted drug-resistant HIV among young pregnant
	    women in Ouagadougou, Burkina Faso
  JOURNAL   Clin. Infect. Dis. 54 (SUPPL 4), S317-S319 (2012)
  PUBMED    22544195
REFERENCE   2 (bases 1 to 1761)
            Show all sequences for reference 2
  AUTHORS   Vidal,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2013) UMR145, IRD, 911 avenue Agropolis, 34394
	    Montpellier cedex 5, FRANCE
FEATURES             Location/Qualifiers
     source	     1..1761
		     /organism="HIV-1 M:CRF06_cpx"
		     /mol_type="genomic RNA"
		     /isolate="SR0046-1061-23"
		     /db_xref="taxon:1345272"
		     /country="Burkina Faso"
		     /collection_date="2009"
     gene	     <1..>1761
		     /gene="pol"
     CDS	     <1..>1761
		     /gene="pol"
		     /note="protease and partial reverse transcriptase region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="polyprotein"
		     /protein_id="CDI40229.1"
		     /db_xref="GI:550593851"
		     /translation="FFRENLAFQQGEAREFSSEQARANSPTCREXRDRRGDSPLXEAG
		     AEGKGAISLNFPQITLWQRPLVXVRIGGQLIEALLDTGADDTVLEDINLPGKWKPKMI
		     GGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIE
		     TVPVKLKPGMDGPKVKQWPLTEEKIKALTEICADMEKEGKISKIGPENPYNTPIFAIK
		     KKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDK
		     SFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRIKNPEMVI
		     YQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDK
		     WTIQPIQLPDKESWTVNDIQKLVGKLNWASQIYSGIKVKQLCRLLRGAKALTDIVPLT
		     AEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGYGQWTYQIYQEPXKNLKTGKY
		     ARTKSAHTNDVRQLTEAVQKIALESIVIWGRTPRFRLPIQKETWETWWTEYWQATWIP
		     EWEFVNTPPLVKLWYQLETEP"
BASE COUNT	669 a	 302 c	  390 g    391 t      9 other
ORIGIN
       1 ttttttaggg agaatctggc cttccaacaa ggggaggcca gggaattttc ttcagaacag 
      61 gccagagcca acagccccac ctgcagagag yctcgggatc ggagaggaga tagccccctc 
     121 yccgaagcag gagccgaggg aaaaggagct atatccctta acttccctca aatcactctt 
     181 tggcaacgac ccctagtcay ggtaagaata gggggacagc tgatagaagc tttattagac 
     241 acaggagcag atgatacagt attagaagac ataaatttac caggaaaatg gaaaccaaag 
     301 atgatagggg gaattggagg ttttatcaaa gtaagacagt atgatcaaat actcatagaa 
     361 atttgtggaa aaaaggcyat aggtacagtr ttagtaggac ctacacctgt caacataatt 
     421 ggacgaaata tgttgaccca gattggttgt actttaaatt ttccaatcag tcctattgaa 
     481 actgtaccag taaaattaaa gccaggaatg gatggcccaa aggttaaaca atggccattg 
     541 acagaagaga aaataaaagc attaacagaa atttgtgcag atatggaaaa ggaaggaaaa 
     601 atttcaaaaa ttgggcctga aaatccatac aatactccaa tatttgctat aaagaaaaag 
     661 gatagtacta aatggagaaa attagtagat ttyagagaac ttaataaaag aactcaagac 
     721 ttttgggaag ttcaattagg aataccacac cctgctgggt tgaagaagaa aaaatcagta 
     781 acagtattgg atgtggggga tgcatatttt tcagttccyt tagataaaag ctttaggaag 
     841 tatactgcat tcactatacc tagtctaaat aatgagacac cagggattag atatcartac 
     901 aatgtacttc cacagggatg gaaaggatca ccagcaatat ttcagtgtag catgacaaaa 
     961 atcttagagc cctttagaat aaaaaatcca gaaatggtga tctaccaata tatggatgat 
    1021 ttatatgtag gatctgattt agaaataggg caacacagag caaaaataga ggagttaaga 
    1081 gaacatctat tgaaatgggg atttaccaca ccagataaaa aacatcagaa agaaccccca 
    1141 tttctttgga tggggtatga actccatcct gacaaatgga caatacagcc tatacaactg 
    1201 ccagacaagg agagctggac tgtcaatgat atacagaaat tggtgggaaa actaaattgg 
    1261 gcaagtcaaa tttattcagg aattaaagta aagcagttat gtagactcct caggggagca 
    1321 aaagcactaa cagacatagt gccactaact gcagaagcag aattagaatt ggcagagaac 
    1381 agggaaattc taaaagagcc agtgcatggg gtatattatg acccatcgaa ggacttaata 
    1441 gcagaaatac agaagcaggg gtatggtcaa tggacatatc aaatatatca ggagccayat 
    1501 aaaaacctaa aaacagggaa gtatgcaaga acaaagtctg cccacactaa tgatgtaaga 
    1561 cagctaacag aagcagtgca aaagatagcc ctagaaagta tagtaatatg gggaaggact 
    1621 cctagattta gactacccat acaaaaggaa acatgggaga catggtggac agagtattgg 
    1681 caagccacct ggatccctga atgggaattt gtcaataccc ctcccctagt aaaactatgg 
    1741 taccagttag aaacagagcc c
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.