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LOCUS HG529958 1761 bp RNA linear VRL 18-OCT-2013
DEFINITION HIV-1 M:CRF06_cpx partial pol gene for polyprotein, protease and
partial reverse transcriptase region, isolate SR0046-1061-23
ACCESSION HG529958
VERSION HG529958.1 GI:550593850
KEYWORDS .
SOURCE HIV-1 M:CRF06_cpx
ORGANISM HIV-1 M:CRF06_cpx Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Somda,A., Sangare,L., Soro,M., Yameogo,S., Bazie,B., Bigirimana,F.,
Bertagnolio,S., Peeters,M., Mouacha,F., Rivera,A.M., Jordan,M.R.
and Sanou,M.J.
TITLE Surveillance of transmitted drug-resistant HIV among young pregnant
women in Ouagadougou, Burkina Faso
JOURNAL Clin. Infect. Dis. 54 (SUPPL 4), S317-S319 (2012)
PUBMED 22544195
REFERENCE 2 (bases 1 to 1761)
Show all sequences for reference 2
AUTHORS Vidal,N.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2013) UMR145, IRD, 911 avenue Agropolis, 34394
Montpellier cedex 5, FRANCE
FEATURES Location/Qualifiers
source 1..1761
/organism="HIV-1 M:CRF06_cpx"
/mol_type="genomic RNA"
/isolate="SR0046-1061-23"
/db_xref="taxon:1345272"
/country="Burkina Faso"
/collection_date="2009"
gene <1..>1761
/gene="pol"
CDS <1..>1761
/gene="pol"
/note="protease and partial reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="polyprotein"
/protein_id="CDI40229.1"
/db_xref="GI:550593851"
/translation="FFRENLAFQQGEAREFSSEQARANSPTCREXRDRRGDSPLXEAG
AEGKGAISLNFPQITLWQRPLVXVRIGGQLIEALLDTGADDTVLEDINLPGKWKPKMI
GGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIE
TVPVKLKPGMDGPKVKQWPLTEEKIKALTEICADMEKEGKISKIGPENPYNTPIFAIK
KKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDK
SFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRIKNPEMVI
YQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDK
WTIQPIQLPDKESWTVNDIQKLVGKLNWASQIYSGIKVKQLCRLLRGAKALTDIVPLT
AEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGYGQWTYQIYQEPXKNLKTGKY
ARTKSAHTNDVRQLTEAVQKIALESIVIWGRTPRFRLPIQKETWETWWTEYWQATWIP
EWEFVNTPPLVKLWYQLETEP"
BASE COUNT 669 a 302 c 390 g 391 t 9 other
ORIGIN
1 ttttttaggg agaatctggc cttccaacaa ggggaggcca gggaattttc ttcagaacag
61 gccagagcca acagccccac ctgcagagag yctcgggatc ggagaggaga tagccccctc
121 yccgaagcag gagccgaggg aaaaggagct atatccctta acttccctca aatcactctt
181 tggcaacgac ccctagtcay ggtaagaata gggggacagc tgatagaagc tttattagac
241 acaggagcag atgatacagt attagaagac ataaatttac caggaaaatg gaaaccaaag
301 atgatagggg gaattggagg ttttatcaaa gtaagacagt atgatcaaat actcatagaa
361 atttgtggaa aaaaggcyat aggtacagtr ttagtaggac ctacacctgt caacataatt
421 ggacgaaata tgttgaccca gattggttgt actttaaatt ttccaatcag tcctattgaa
481 actgtaccag taaaattaaa gccaggaatg gatggcccaa aggttaaaca atggccattg
541 acagaagaga aaataaaagc attaacagaa atttgtgcag atatggaaaa ggaaggaaaa
601 atttcaaaaa ttgggcctga aaatccatac aatactccaa tatttgctat aaagaaaaag
661 gatagtacta aatggagaaa attagtagat ttyagagaac ttaataaaag aactcaagac
721 ttttgggaag ttcaattagg aataccacac cctgctgggt tgaagaagaa aaaatcagta
781 acagtattgg atgtggggga tgcatatttt tcagttccyt tagataaaag ctttaggaag
841 tatactgcat tcactatacc tagtctaaat aatgagacac cagggattag atatcartac
901 aatgtacttc cacagggatg gaaaggatca ccagcaatat ttcagtgtag catgacaaaa
961 atcttagagc cctttagaat aaaaaatcca gaaatggtga tctaccaata tatggatgat
1021 ttatatgtag gatctgattt agaaataggg caacacagag caaaaataga ggagttaaga
1081 gaacatctat tgaaatgggg atttaccaca ccagataaaa aacatcagaa agaaccccca
1141 tttctttgga tggggtatga actccatcct gacaaatgga caatacagcc tatacaactg
1201 ccagacaagg agagctggac tgtcaatgat atacagaaat tggtgggaaa actaaattgg
1261 gcaagtcaaa tttattcagg aattaaagta aagcagttat gtagactcct caggggagca
1321 aaagcactaa cagacatagt gccactaact gcagaagcag aattagaatt ggcagagaac
1381 agggaaattc taaaagagcc agtgcatggg gtatattatg acccatcgaa ggacttaata
1441 gcagaaatac agaagcaggg gtatggtcaa tggacatatc aaatatatca ggagccayat
1501 aaaaacctaa aaacagggaa gtatgcaaga acaaagtctg cccacactaa tgatgtaaga
1561 cagctaacag aagcagtgca aaagatagcc ctagaaagta tagtaatatg gggaaggact
1621 cctagattta gactacccat acaaaaggaa acatgggaga catggtggac agagtattgg
1681 caagccacct ggatccctga atgggaattt gtcaataccc ctcccctagt aaaactatgg
1741 taccagttag aaacagagcc c
//
last modified: Tue May 31 10:56 2022