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LOCUS	    HG529935		    1686 bp    RNA     linear	VRL 18-OCT-2013
DEFINITION  HIV-1 M:CRF02_AG partial pol gene for polyprotein, protease and
	    partial reverse transcriptase region, isolate SR046-277-23
ACCESSION   HG529935
VERSION     HG529935.1 GI:550593772
KEYWORDS    .
SOURCE	    HIV-1 M:CRF02_AG
  ORGANISM  HIV-1 M:CRF02_AG Viruses; Retro-transcribing viruses; Retroviridae;
	    Orthoretrovirinae; Lentivirus; Primate lentivirus group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Somda,A., Sangare,L., Soro,M., Yameogo,S., Bazie,B., Bigirimana,F.,
	    Bertagnolio,S., Peeters,M., Mouacha,F., Rivera,A.M., Jordan,M.R.
	    and Sanou,M.J.
  TITLE     Surveillance of transmitted drug-resistant HIV among young pregnant
	    women in Ouagadougou, Burkina Faso
  JOURNAL   Clin. Infect. Dis. 54 (SUPPL 4), S317-S319 (2012)
  PUBMED    22544195
REFERENCE   2 (bases 1 to 1686)
            Show all sequences for reference 2
  AUTHORS   Vidal,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2013) UMR145, IRD, 911 avenue Agropolis, 34394
	    Montpellier cedex 5, FRANCE
FEATURES             Location/Qualifiers
     source	     1..1686
		     /organism="HIV-1 M:CRF02_AG"
		     /mol_type="genomic RNA"
		     /isolate="SR046-277-23"
		     /db_xref="taxon:1287874"
		     /country="Burkina Faso"
		     /collection_date="2008"
     gene	     <1..>1686
		     /gene="pol"
     CDS	     <1..>1686
		     /gene="pol"
		     /note="protease and partial reverse transcriptase region"
		     /codon_start="2"
		     /transl_table="1"
		     /product="polyprotein"
		     /protein_id="CDI40206.1"
		     /db_xref="GI:550593773"
		     /translation="SREXWDGGRDBLLSEAGTEGQGAISSFXFPQITLWQRPLITVKI
		     GGQLIEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGKXAIG
		     TVLVGPTPVNIIGRNXLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTGEKIK
		     ALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEV
		     QLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEEFRKYTAFTIPSTNNETPGIRYQYNV
		     LPQGWKGSPAIFQASMTKILEPFRTKNPEIVIYQYMDDLYVGSDLEIGQHRAKIEELR
		     EHLLXWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIELPEKDSWTVNDIQKLVGKL
		     NWASQIYAGIKVKQLCRLLRGAKALTDVVTLTEEAELELAENREILREPVHGVYYDPT
		     KDLIAEIQKQGQDQWTYQIYQEPFKNLKTGKYAKKRSAHTNDVKQLAEVVQKAATESI
		     VIWGKTPKFRLPIQRETWEAWWMEYWQATWIPEWEFVNTPPLVKLWYQLEKDP"
BASE COUNT	653 a	 281 c	  368 g    374 t     10 other
ORIGIN
       1 cagcagagag ygttgggatg ggggaagaga tracctcctc tccgaagcag gaacagaggg 
      61 acaaggagct atatcctcct ttarcttccc tcaaatcact ctttggcaac gacccctaat 
     121 cacagtaaaa atagggggac agctaataga agccctatta gacacaggag cagatgatac 
     181 agtattagaa gaaataaatt taccaggaaa atggaaacca aaaatgatag ggggaattgg 
     241 aggttttatc aaagtaagac aatatgatca gatacctata gaaatttgtg gaaaaarggc 
     301 cataggtaca gtattagtag gacctacacc tgtcaacata attggacgaa atatrttrac 
     361 tcagattggt tgtactttaa attttccaat tagtcctatt gaaactgtgc cagtaaaatt 
     421 aaagccagga atggatggcc caaaggttaa acaatggcca ttgacaggag aaaaaataaa 
     481 agcattaaca gaaatttgta cagagatgga aaaggaagga aaaatttcaa aaattggacc 
     541 tgaaaatcca tacaatactc cagtatttgc tataaagaaa aaggatagta ctaaatggag 
     601 aaaattagta gatttcagag aactcaataa gagaactcaa gacttctggg aggtccagtt 
     661 aggaatacct catcccgcgg gattaaaaaa gaaaaaatca gtaacagtac tggatgtggg 
     721 ggatgcatat ttttcagttc ctttagatga ggaatttaga aagtatactg cattcactat 
     781 acctagtaca aataatgaga caccagggat tagatatcag tacaatgtgc ttccrcaggg 
     841 gtggaaagga tcaccagcaa tatttcaggc aagcatgaca aaratyttag agccctttag 
     901 aacaaaaaat ccagagatag tgatctacca atatatggat gatttatatg taggatctga 
     961 cttagagata gggcagcata gagcaaaaat agaggagctg agagaacatc tattgaratg 
    1021 gggatttacc acaccagaca aaaaacacca gaaagaacct ccatttcttt ggatggggta 
    1081 tgaactccat cctgacaaat ggacagtcca gcctatagag ctgccagaaa aagacagctg 
    1141 gactgtcaat gatatacaga aattagtggg aaagctaaat tgggcaagtc agatttatgc 
    1201 aggaattaaa gtaaagcaac tgtgtagact cctcagggga gccaaagcac taacagatgt 
    1261 agtaacactg actgaggaag cagaattaga attggcagag aacagggaaa ttctaagaga 
    1321 gcctgtacat ggagtatatt atgacccaac aaaagactta atagcagaaa tacagaaaca 
    1381 agggcaagac caatggacat atcaaattta tcaagagccc tttaaaaatc taaaaacagg 
    1441 aaaatatgca aaaaagaggt ctgcccacac taatgatgta aaacaattag cagaggtagt 
    1501 gcaaaaagca gctacagaaa gcatagtaat atggggaaag acccctaaat ttagactacc 
    1561 catacaaaga gaaacatggg aagcatggtg gatggagtat tggcaggcta cctggattcc 
    1621 tgaatgggag tttgtcaata cccctcctct agtaaaatta tggtaccagt tagaaaaaga 
    1681 ccccat
//
last modified: Tue May 31 10:56 2022


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