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LOCUS HG529935 1686 bp RNA linear VRL 18-OCT-2013
DEFINITION HIV-1 M:CRF02_AG partial pol gene for polyprotein, protease and
partial reverse transcriptase region, isolate SR046-277-23
ACCESSION HG529935
VERSION HG529935.1 GI:550593772
KEYWORDS .
SOURCE HIV-1 M:CRF02_AG
ORGANISM HIV-1 M:CRF02_AG Viruses; Retro-transcribing viruses; Retroviridae;
Orthoretrovirinae; Lentivirus; Primate lentivirus group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Somda,A., Sangare,L., Soro,M., Yameogo,S., Bazie,B., Bigirimana,F.,
Bertagnolio,S., Peeters,M., Mouacha,F., Rivera,A.M., Jordan,M.R.
and Sanou,M.J.
TITLE Surveillance of transmitted drug-resistant HIV among young pregnant
women in Ouagadougou, Burkina Faso
JOURNAL Clin. Infect. Dis. 54 (SUPPL 4), S317-S319 (2012)
PUBMED 22544195
REFERENCE 2 (bases 1 to 1686)
Show all sequences for reference 2
AUTHORS Vidal,N.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2013) UMR145, IRD, 911 avenue Agropolis, 34394
Montpellier cedex 5, FRANCE
FEATURES Location/Qualifiers
source 1..1686
/organism="HIV-1 M:CRF02_AG"
/mol_type="genomic RNA"
/isolate="SR046-277-23"
/db_xref="taxon:1287874"
/country="Burkina Faso"
/collection_date="2008"
gene <1..>1686
/gene="pol"
CDS <1..>1686
/gene="pol"
/note="protease and partial reverse transcriptase region"
/codon_start="2"
/transl_table="1"
/product="polyprotein"
/protein_id="CDI40206.1"
/db_xref="GI:550593773"
/translation="SREXWDGGRDBLLSEAGTEGQGAISSFXFPQITLWQRPLITVKI
GGQLIEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGKXAIG
TVLVGPTPVNIIGRNXLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTGEKIK
ALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEV
QLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEEFRKYTAFTIPSTNNETPGIRYQYNV
LPQGWKGSPAIFQASMTKILEPFRTKNPEIVIYQYMDDLYVGSDLEIGQHRAKIEELR
EHLLXWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIELPEKDSWTVNDIQKLVGKL
NWASQIYAGIKVKQLCRLLRGAKALTDVVTLTEEAELELAENREILREPVHGVYYDPT
KDLIAEIQKQGQDQWTYQIYQEPFKNLKTGKYAKKRSAHTNDVKQLAEVVQKAATESI
VIWGKTPKFRLPIQRETWEAWWMEYWQATWIPEWEFVNTPPLVKLWYQLEKDP"
BASE COUNT 653 a 281 c 368 g 374 t 10 other
ORIGIN
1 cagcagagag ygttgggatg ggggaagaga tracctcctc tccgaagcag gaacagaggg
61 acaaggagct atatcctcct ttarcttccc tcaaatcact ctttggcaac gacccctaat
121 cacagtaaaa atagggggac agctaataga agccctatta gacacaggag cagatgatac
181 agtattagaa gaaataaatt taccaggaaa atggaaacca aaaatgatag ggggaattgg
241 aggttttatc aaagtaagac aatatgatca gatacctata gaaatttgtg gaaaaarggc
301 cataggtaca gtattagtag gacctacacc tgtcaacata attggacgaa atatrttrac
361 tcagattggt tgtactttaa attttccaat tagtcctatt gaaactgtgc cagtaaaatt
421 aaagccagga atggatggcc caaaggttaa acaatggcca ttgacaggag aaaaaataaa
481 agcattaaca gaaatttgta cagagatgga aaaggaagga aaaatttcaa aaattggacc
541 tgaaaatcca tacaatactc cagtatttgc tataaagaaa aaggatagta ctaaatggag
601 aaaattagta gatttcagag aactcaataa gagaactcaa gacttctggg aggtccagtt
661 aggaatacct catcccgcgg gattaaaaaa gaaaaaatca gtaacagtac tggatgtggg
721 ggatgcatat ttttcagttc ctttagatga ggaatttaga aagtatactg cattcactat
781 acctagtaca aataatgaga caccagggat tagatatcag tacaatgtgc ttccrcaggg
841 gtggaaagga tcaccagcaa tatttcaggc aagcatgaca aaratyttag agccctttag
901 aacaaaaaat ccagagatag tgatctacca atatatggat gatttatatg taggatctga
961 cttagagata gggcagcata gagcaaaaat agaggagctg agagaacatc tattgaratg
1021 gggatttacc acaccagaca aaaaacacca gaaagaacct ccatttcttt ggatggggta
1081 tgaactccat cctgacaaat ggacagtcca gcctatagag ctgccagaaa aagacagctg
1141 gactgtcaat gatatacaga aattagtggg aaagctaaat tgggcaagtc agatttatgc
1201 aggaattaaa gtaaagcaac tgtgtagact cctcagggga gccaaagcac taacagatgt
1261 agtaacactg actgaggaag cagaattaga attggcagag aacagggaaa ttctaagaga
1321 gcctgtacat ggagtatatt atgacccaac aaaagactta atagcagaaa tacagaaaca
1381 agggcaagac caatggacat atcaaattta tcaagagccc tttaaaaatc taaaaacagg
1441 aaaatatgca aaaaagaggt ctgcccacac taatgatgta aaacaattag cagaggtagt
1501 gcaaaaagca gctacagaaa gcatagtaat atggggaaag acccctaaat ttagactacc
1561 catacaaaga gaaacatggg aagcatggtg gatggagtat tggcaggcta cctggattcc
1621 tgaatgggag tttgtcaata cccctcctct agtaaaatta tggtaccagt tagaaaaaga
1681 ccccat
//
last modified: Tue May 31 10:56 2022