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LOCUS GU966559 882 bp RNA linear VRL 21-APR-2010
DEFINITION HIV-2 isolate 20080867 from Luxembourg integrase (pol) gene,
partial cds
ACCESSION GU966559
VERSION GU966559.1 GI:294829062
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 882)
Show all sequences for reference 1
AUTHORS Perez-Bercoff,D., Triqueneaux,P., Lambert,C., Oumar,A.A.,
Ternes,A.-M., Goubau,P., Schmit,J.-C. and Ruelle,J.P.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2010) AIDS Reference Laboratory, UC Louvain,
Avenue Hippocrate 54 - UCL 5492, Bruxelles 1200, Belgium
REFERENCE 2
Show all sequences for reference 2
AUTHORS Perez Bercoff,D., Trinqueneaux,P., Lambert,C., Oumar,A.A.,
Ternes,A.M., Dao,S., Goubau,P., Schmit,J.C. and Ruelle,J.
TITLE Polymorphisms of HIV-2 integrase and selection of resistance to
raltegravir
JOURNAL Retrovirology 7 (1), 98 (2010)
PUBMED 21114823
FEATURES Location/Qualifiers
source 1..882
/organism="Human immunodeficiency virus 2"
/mol_type="genomic RNA"
/isolate="20080867"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Luxembourg"
/collection_date="03-Sep-2008"
/note="group: A"
gene <1..882
/gene="pol"
CDS <1..882
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ADF42966.1"
/db_xref="GI:294829063"
/translation="FIERIEPAQEEHEKFHSNIKELAHKFGJPNLVAKQIVNTCAQCQ
QKGEAIHGQVNAEJGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLL
KLASRWPITHLHTDNGXNFTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKN
QIDRIREQANTMETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNS
KLKNFRVYFREGRDQLWKGPGELLWKGEGAVVVKVGTDIKIVPRRKAKIIRDYGGRQE
LDSXPHVEGXREDGEMA"
BASE COUNT 333 a 154 c 211 g 162 t 22 other
ORIGIN
1 ttcatagaaa gaatagagcc cgctcaggaa gaacatgaaa aatttcacag caatataaaa
61 gaaytagccc ataaatttgg awtacccaac ctrgtrgcaa aacagatagt aaayacatgt
121 gcccaatgtc aacagaaagg ggargctata catgggcaag taaatgcaga rwtaggcact
181 tggcaaatgg actgcacaca cttagaagga aaaatcatta tagtagcagt acatgttgca
241 agtgggttya tagaagcaga agtcatccca caggaatcag gaaggcaaac agcactcttc
301 ctgttaaaac tggccagtag gtggccaata acacacttac acacagataa tggtrcyaac
361 ttcacttcac aggaggtraa gatggtagca tggtgggtag gtatagaaca atcctttggr
421 gtgccttaca acccacaaag ccarggagta gtagaagcaa tgaatcacca cctraaaaat
481 cagatagaca gaattagaga gcaggcaaac acaatggara caatagtact aatggcagtt
541 cattgcatga attttaaaag aaggggagga ataggggata tgaccccagc agaaagayta
601 atcaatatga tcaccacaga acaagarata caattcctcc aagcaaaaaa ttcaaaatta
661 aaaaattttc gggtctattt cagagaaggc agagatcagc tgtggaaagg ccctggggag
721 ctactgtgga aaggagaagg agcagtcgta gtcaaggtag ggacagacat aaaaatagta
781 ccaagaagga aagccaagat catcagagac tatggaggaa grcaagagct ggatagtrgt
841 ccccacgtgg agggtrccag ggaggatgga garatggcat ag
//
last modified: Tue May 31 10:56 2022