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LOCUS	    GU966559		     882 bp    RNA     linear	VRL 21-APR-2010
DEFINITION  HIV-2 isolate 20080867 from Luxembourg integrase (pol) gene,
	    partial cds
ACCESSION   GU966559
VERSION     GU966559.1 GI:294829062
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 882)
            Show all sequences for reference 1
  AUTHORS   Perez-Bercoff,D., Triqueneaux,P., Lambert,C., Oumar,A.A.,
	    Ternes,A.-M., Goubau,P., Schmit,J.-C. and Ruelle,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2010) AIDS Reference Laboratory, UC Louvain,
	    Avenue Hippocrate 54 - UCL 5492, Bruxelles 1200, Belgium
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Perez Bercoff,D., Trinqueneaux,P., Lambert,C., Oumar,A.A.,
	    Ternes,A.M., Dao,S., Goubau,P., Schmit,J.C. and Ruelle,J.
  TITLE     Polymorphisms of HIV-2 integrase and selection of resistance to
	    raltegravir
  JOURNAL   Retrovirology 7 (1), 98 (2010)
  PUBMED    21114823
FEATURES             Location/Qualifiers
     source	     1..882
		     /organism="Human immunodeficiency virus 2"
		     /mol_type="genomic RNA"
		     /isolate="20080867"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Luxembourg"
		     /collection_date="03-Sep-2008"
		     /note="group: A"
     gene	     <1..882
		     /gene="pol"
     CDS	     <1..882
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ADF42966.1"
		     /db_xref="GI:294829063"
		     /translation="FIERIEPAQEEHEKFHSNIKELAHKFGJPNLVAKQIVNTCAQCQ
		     QKGEAIHGQVNAEJGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLL
		     KLASRWPITHLHTDNGXNFTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKN
		     QIDRIREQANTMETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQAKNS
		     KLKNFRVYFREGRDQLWKGPGELLWKGEGAVVVKVGTDIKIVPRRKAKIIRDYGGRQE
		     LDSXPHVEGXREDGEMA"
BASE COUNT	333 a	 154 c	  211 g    162 t     22 other
ORIGIN
       1 ttcatagaaa gaatagagcc cgctcaggaa gaacatgaaa aatttcacag caatataaaa 
      61 gaaytagccc ataaatttgg awtacccaac ctrgtrgcaa aacagatagt aaayacatgt 
     121 gcccaatgtc aacagaaagg ggargctata catgggcaag taaatgcaga rwtaggcact 
     181 tggcaaatgg actgcacaca cttagaagga aaaatcatta tagtagcagt acatgttgca 
     241 agtgggttya tagaagcaga agtcatccca caggaatcag gaaggcaaac agcactcttc 
     301 ctgttaaaac tggccagtag gtggccaata acacacttac acacagataa tggtrcyaac 
     361 ttcacttcac aggaggtraa gatggtagca tggtgggtag gtatagaaca atcctttggr 
     421 gtgccttaca acccacaaag ccarggagta gtagaagcaa tgaatcacca cctraaaaat 
     481 cagatagaca gaattagaga gcaggcaaac acaatggara caatagtact aatggcagtt 
     541 cattgcatga attttaaaag aaggggagga ataggggata tgaccccagc agaaagayta 
     601 atcaatatga tcaccacaga acaagarata caattcctcc aagcaaaaaa ttcaaaatta 
     661 aaaaattttc gggtctattt cagagaaggc agagatcagc tgtggaaagg ccctggggag 
     721 ctactgtgga aaggagaagg agcagtcgta gtcaaggtag ggacagacat aaaaatagta 
     781 ccaagaagga aagccaagat catcagagac tatggaggaa grcaagagct ggatagtrgt 
     841 ccccacgtgg agggtrccag ggaggatgga garatggcat ag
//
last modified: Tue May 31 10:56 2022


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