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LOCUS	    GU562092		    4646 bp    DNA     linear	VRL 06-APR-2010
DEFINITION  HIV-1 isolate HDNDRPI001B4 from USA pol protein (pol) gene, partial
	    cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev
	    protein (rev), vpu protein (vpu), and envelope glycoprotein (env)
	    genes, complete cds; and nef pseudogene, complete sequence
ACCESSION   GU562092
VERSION     GU562092.1 GI:289068781
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 4646)
            Show all sequences for reference 1
  AUTHORS   Bar,K.J., Li,H., Chamberland,A., Tremblay,C., Routy,J.P.,
	    Grayson,T., Sun,C., Wang,S., Learn,G.H., Morgan,C.J.,
	    Schumacher,J.E., Haynes,B.F., Keele,B.F., Hahn,B.H. and Shaw,G.M.
  TITLE     Wide variation in the multiplicity of HIV-1 infection among
	    injection drug users.
  JOURNAL   J. Virol.. 84(12); 6241-7 (2010)
  PUBMED    20375173
REFERENCE   2 (bases 1 to 4646)
            Show all sequences for reference 2
  AUTHORS   Learn,G.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2010) Medicine, University of Alabama at
	    Birmingham, 720 20th Street South, Kaul 806, Birmingham, AL 35294,
	    USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code HDNDRPI001 Sequence Name
	    HDNDRPI001B4 Subtype B Sample date 8/6/1998 Patient sex M Infection
	    country CA Fiebig Stage V DBID 1245443657 ##HIVDataBaseData-END##
	    Sampling country is USA in GenBank accession records, but data from
	    the paper and authors clearly indicate these sequences were from a
	    Montreal, Canada cohort.
FEATURES             Location/Qualifiers
     source	     1..4646
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="HDNDRPI001B4"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: CA"
		     /collection_date="06-Aug-1998"
		     /note="subtype: B"
     gene	     <1..129
		     /gene="pol"
     CDS	     <1..129
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADC81897.1"
		     /db_xref="GI:289068782"
		     /translation="GAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED"
     gene	     74..652
		     /gene="vif"
     CDS	     74..652
		     /gene="vif"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vif protein"
		     /protein_id="ADC81898.1"
		     /db_xref="GI:289068783"
		     /translation="MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSKKAKGWFYRHHY
		     ESTNPRTSSEVHIPVGEGRLIITTYWGLHTGERDWHLGQGVSIEWRERRYRTQVDPSL
		     ADQLIHLYYFDCFSESAIRNAILGHIVSPSCDYQAGHNKVGSLQYLALTALIKPKKIK
		     PPLPSVAKLTEDRWNKPQKTKGHRGSHTMNGH"
     gene	     592..882
		     /gene="vpr"
     CDS	     592..882
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="ADC81899.1"
		     /db_xref="GI:289068784"
		     /translation="MEQAPEDQGPQREPYNEWALELLEELKNEAVRHFPRPWLHSLGQ
		     YIYETYGDTWTGVEAIIRILQQLLFIHFRIGCRHSRIGIIRQRRTRNGASRS"
     gene	     863..3486
		     /gene="tat"
     CDS	     join(863..1077,3396..3486)
		     /gene="tat"
		     /codon_start="1"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ADC81900.1"
		     /db_xref="GI:289068785"
		     /translation="MEPVDPRLEPWKHPGSQPKTACTNCYCKKCCLHCQVCFIKKGLG
		     ISYGRKKRRQRRRPPQDSQTHQVSLSKQPASQPRGDPTGPKESKKKVERETKTDPED"
     gene	     1002..3670
		     /gene="rev"
     CDS	     join(1002..1077,3396..3670)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ADC81901.1"
		     /db_xref="GI:289068786"
		     /translation="MAGRSGDSDEDLLKTVRLIKYLYQSNPPPNPEGTRQARRNRRRR
		     WRERQRQIRKISGWILSNCLGRSEEPVPFQLPPLERLTLDCNEDCGTSGTQGVGNPQI
		     LVESPTVLEPGTKE"
     gene	     1094..1339
		     /gene="vpu"
     CDS	     1094..1339
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ADC81902.1"
		     /db_xref="GI:289068787"
		     /translation="MQSLQILAIVALVVVTIIAIVVWTIVLIEYRKILRQRKIDRLID
		     RIRERAEDSGNESDGDQEELSELVERGHLAPWDIDDL"
     gene	     1257..3812
		     /gene="env"
     CDS	     1257..3812
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADC81903.1"
		     /db_xref="GI:289068788"
		     /translation="MRVTGIRKSCQNLWRGGILLLGILMICSTTEQLWVTIYYGVPVW
		     KEATTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEILLENVTENFNMWKNNMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCSDLGNITNTNTTSSSGIEMERGEIKNCSFN
		     ITTSIRDKMQKQYATFYKLDLVSIDNTSEYRLISCNTSVITQACPKVTFEPIPIHYCA
		     PAGFAILKCKDKKFNGKGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENF
		     TNNAKTIIVQLNEFVEINCIRPNNNTRKSIHIGPGKAFYTTGEIIGDIRQAHCNISKT
		     KWNNTLSQIAKKLREQFGNNKTIVFNQSSGGDPEIETHSFNCGGEFFYCNTTQLFNST
		     WNNNSTWSSNSTGDNENITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGMIL
		     TRDGGENNTTEIFRPGGGDMRDNWRSELYKYKVVKIEPIGVAPTKAKRRVVQREKRAV
		     GMGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW
		     GIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNDIWDNMTWM
		     QWEREIDNYTSLIYTLIEESQNQQEKNEQDLLALDKWASLWSWFDITNWLWYIKIFIM
		     IIGGLVGLRIIFTVLSIVNRVRKGYSPLSFQTRLPTQRGPDRPEGIEEEGGERDKDRS
		     GRLVDGFLAIVWVDLRSLCLFSYHRLRDLLLIVTRIVELLGHRGWEILKYWWNLLQYW
		     SQELRNSAVSLLNATAIAVAEGTDRVIEFLQRAFRAFIHIPRRIRQGLERVLQ"
     gene	     3814..4436
		     /gene="nef"
		     /pseudo="nef"
     CDS	     3814..4436
		     /gene="nef"
		     /pseudo="nef"
		     /codon_start="1"
		     /transl_table="1"
BASE COUNT     1623 a	 807 c	 1117 g   1099 t
ORIGIN
       1 ggggcagtag taatacaaga taatagtgac ataaaagtag tgccaagaag aaaagcaaag 
      61 atcattaggg attatggaaa acagatggca ggtgatgatt gtgtggcaag tagacaggat 
     121 gaggattaga acatggaaaa gtttagtaaa acaccatatg tatgtttcaa agaaagctaa 
     181 gggatggttt tatagacatc actatgaaag cactaatcca agaacaagtt cagaagtaca 
     241 catcccagta ggggaaggta gattgataat aacaacatat tggggtctgc atacaggaga 
     301 aagagactgg catttgggtc agggagtctc catagaatgg agggaaagga gatataggac 
     361 acaagtagac cctagtctag cagaccaact aattcatctg tattactttg attgtttttc 
     421 agaatctgct ataagaaatg ccatattagg acatatagtt agtcctagtt gtgattacca 
     481 agcaggacat aacaaggtag gatctctaca gtacttagca ctaacagcat taataaaacc 
     541 aaaaaagata aagccacctt tgcctagtgt tgcaaagttg acagaggata gatggaacaa 
     601 gccccagaag accaagggcc acagagggag ccatacaatg aatgggcact agagctttta 
     661 gaggagctta agaatgaagc tgtcagacat tttcccaggc catggcttca tagcttaggg 
     721 caatatatat atgaaactta tggggatact tggacaggag tggaagccat aataagaatt 
     781 ctgcaacaac tgctgtttat ccatttcaga attgggtgtc gacatagcag aataggcatt 
     841 attcgacaga ggagaacaag aaatggagcc agtagatcct agactagagc cctggaagca 
     901 tccaggaagt cagcctaaga ctgcttgtac caattgctat tgtaaaaaat gttgccttca 
     961 ttgccaagtt tgcttcataa aaaaaggctt aggcatctcc tatggcagga agaagcggag 
    1021 acagcgacga agacctcctc aagacagtca gactcatcaa gtatctctat caaagcagta 
    1081 agtagcgcat gtaatgcaat ctttacaaat attagcaata gtagcattag tagtagtaac 
    1141 aataatagca atagtagtgt ggaccatagt actcatagaa tataggaaaa tattaaggca 
    1201 aaggaaaata gacaggttaa ttgatagaat aagagaaaga gcagaagaca gtggcaatga 
    1261 gagtgacggg gatcaggaag agttgtcaga acttgtggag agggggcatc ttgctccttg 
    1321 ggatattgat gatctgtagt actacagaac agttatgggt cacgatctat tatggggtac 
    1381 cagtgtggaa agaagcaacc accactctat tttgtgcatc agatgctaaa gcatatgata 
    1441 cagaagcaca taatgtttgg gccacacatg cttgtgtacc cacagacccc aacccacaag 
    1501 aaatattatt ggaaaatgtg acagaaaatt ttaacatgtg gaaaaataac atggtagaac 
    1561 agatgcatga ggatataatc agtttatggg atcaaagcct aaagccatgt gtaaaattaa 
    1621 ccccactctg tgtcacttta aattgctctg atttaggaaa tattactaat accaatacca 
    1681 ctagtagtag tgggatagag atggagagag gagaaataaa aaactgctct ttcaatatca 
    1741 ccacaagcat aagagataag atgcaaaaac aatatgcaac tttttataaa cttgatttag 
    1801 tatcaataga taatactagc gaatataggt tgataagttg taacacctca gtcattacac 
    1861 aggcctgtcc aaaagtaaca tttgaaccaa ttcccataca ttattgtgcc ccggctggtt 
    1921 ttgcgattct aaagtgtaag gataaaaagt tcaatggaaa aggaccatgt aaaaatgtca 
    1981 gcacagtaca atgtacacat ggaattaggc cagtagtatc aactcaattg ctgttaaatg 
    2041 gcagtctagc agaagaagag gtagtaatta gatctgaaaa tttcacaaac aatgctaaaa 
    2101 ccataatagt acaactgaat gaatttgtag aaattaattg tataagaccc aacaacaata 
    2161 caagaaaaag tatacatata ggaccaggga aagcattcta tacaacagga gaaataatag 
    2221 gagatataag acaagcacat tgcaacatta gtaaaactaa atggaataac actttaagtc 
    2281 agatagctaa aaaattaaga gaacaatttg ggaataataa aacaatagtc tttaatcaat 
    2341 cctcaggagg ggacccagaa attgaaacac acagttttaa ctgtggaggg gaatttttct 
    2401 actgtaatac aacacaactg tttaattcaa cttggaataa taactcaact tggagtagta 
    2461 attcaacggg agataatgaa aatatcaccc tcccatgcag aataaaacaa attataaaca 
    2521 tgtggcagga agtaggaaaa gcaatgtatg cccctcccat cagaggacaa attagatgct 
    2581 catcaaatat tacagggatg attttaacaa gagatggtgg tgagaacaac accactgaga 
    2641 tcttcagacc tggaggagga gatatgaggg acaattggag aagtgaatta tataaatata 
    2701 aagtagtaaa aattgaacca ataggagtag cacccaccaa ggcaaagaga agagtggtgc 
    2761 agagagaaaa aagagcagtg ggaatgggag ctttgttcct tgggttcttg ggagcagcag 
    2821 gaagcactat gggcgcagca tcaataacgc tgacggtaca ggccaggcaa ttattgtctg 
    2881 gtatagtgca acagcagaat aatttgctga gagctattga ggcgcaacag catctgttgc 
    2941 aactcacagt ctggggcatc aagcagctcc aggcaagagt cctggctgtg gagagatacc 
    3001 taaaggatca acagctcctg ggaatttggg gctgctctgg aaaactcatt tgcaccaccg 
    3061 ctgtgccttg gaatgctagt tggagtaata aatctctgaa tgacatttgg gataatatga 
    3121 cctggatgca gtgggaaaga gaaattgaca attacacaag cttaatatac actttaattg 
    3181 aagaatcgca gaaccaacaa gaaaagaatg aacaagactt attggcatta gataaatggg 
    3241 caagtttatg gagttggttt gacataacga attggctgtg gtatataaaa atattcataa 
    3301 tgataatagg aggattagta ggtttaagaa taatttttac tgtactttct atagtgaata 
    3361 gagttaggaa gggatactca ccattatcat ttcagacccg cctcccaacc cagaggggac 
    3421 ccgacaggcc cgaaggaatc gaagaagaag gtggagagag agacaaagac agatccggaa 
    3481 gattagtgga tggattctta gcaattgtct gggtcgatct gaggagcctg tgccttttca 
    3541 gctaccaccg cttgagagac ttactcttga ttgtaacgag gattgtggaa cttctgggac 
    3601 acagggggtg ggaaatcctc aaatactggt ggaatctcct acagtattgg agccaggaac 
    3661 taaggaatag tgctgttagc ttgcttaatg ccacagccat agcagtagct gagggaacag 
    3721 atagggttat agaattctta caaagagctt ttagagcttt tatccatata cctagaagaa 
    3781 taagacaggg cttggaaagg gttttgcaat aagatgggtg gcaagtggtc aaaaagaatg 
    3841 ggatggccta ctgtaaggga aaaaatgaga cgaactagtc cagcagcaga tggggtgggg 
    3901 gcagtatccc gagacctgga aaaacatgga gcaattacaa gtagcaatac agcagctacc 
    3961 aatgctgatt gtgcctggct agaagcacaa gaggaagagg aagtgggttt tccagtcaga 
    4021 cctcaggtac ctttaagacc aatgacttac aagggagctt tagatcttag ccacttttta 
    4081 aaagaaaagg ggggactgga agggatgatt cactcccaaa acagacaaga tatccttgat 
    4141 ctgtgggtct accacacaca aggctacttc cctgattggc agaactacac accagggcca 
    4201 gggaccaggt ttccactgac ctttggatgg tgcttcaagc tagtaccact tgagccagag 
    4261 gaggtagaaa aggccaatga aggagagaac aactgcttgt tacaccctgt aagccagcat 
    4321 gggatggggg accctgagag agaagtgtta gtatggaaat ttgacagcaa gctagcattt 
    4381 catcacatgg cccgagagct gcatccggaa tacttcaaga actgaagaac tgctgacatc 
    4441 gagctttcta caagggactt tccgctgggg actttccagg ggaggcgtgg cctgggcggg 
    4501 actggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg 
    4561 gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact 
    4621 gcttaagcct caataaagct tgcctt
//
last modified: Tue May 31 10:56 2022


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