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LOCUS GU562092 4646 bp DNA linear VRL 06-APR-2010
DEFINITION HIV-1 isolate HDNDRPI001B4 from USA pol protein (pol) gene, partial
cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev
protein (rev), vpu protein (vpu), and envelope glycoprotein (env)
genes, complete cds; and nef pseudogene, complete sequence
ACCESSION GU562092
VERSION GU562092.1 GI:289068781
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 4646)
Show all sequences for reference 1
AUTHORS Bar,K.J., Li,H., Chamberland,A., Tremblay,C., Routy,J.P.,
Grayson,T., Sun,C., Wang,S., Learn,G.H., Morgan,C.J.,
Schumacher,J.E., Haynes,B.F., Keele,B.F., Hahn,B.H. and Shaw,G.M.
TITLE Wide variation in the multiplicity of HIV-1 infection among
injection drug users.
JOURNAL J. Virol.. 84(12); 6241-7 (2010)
PUBMED 20375173
REFERENCE 2 (bases 1 to 4646)
Show all sequences for reference 2
AUTHORS Learn,G.H.
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2010) Medicine, University of Alabama at
Birmingham, 720 20th Street South, Kaul 806, Birmingham, AL 35294,
USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code HDNDRPI001 Sequence Name
HDNDRPI001B4 Subtype B Sample date 8/6/1998 Patient sex M Infection
country CA Fiebig Stage V DBID 1245443657 ##HIVDataBaseData-END##
Sampling country is USA in GenBank accession records, but data from
the paper and authors clearly indicate these sequences were from a
Montreal, Canada cohort.
FEATURES Location/Qualifiers
source 1..4646
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="HDNDRPI001B4"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: CA"
/collection_date="06-Aug-1998"
/note="subtype: B"
gene <1..129
/gene="pol"
CDS <1..129
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADC81897.1"
/db_xref="GI:289068782"
/translation="GAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED"
gene 74..652
/gene="vif"
CDS 74..652
/gene="vif"
/codon_start="1"
/transl_table="1"
/product="vif protein"
/protein_id="ADC81898.1"
/db_xref="GI:289068783"
/translation="MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSKKAKGWFYRHHY
ESTNPRTSSEVHIPVGEGRLIITTYWGLHTGERDWHLGQGVSIEWRERRYRTQVDPSL
ADQLIHLYYFDCFSESAIRNAILGHIVSPSCDYQAGHNKVGSLQYLALTALIKPKKIK
PPLPSVAKLTEDRWNKPQKTKGHRGSHTMNGH"
gene 592..882
/gene="vpr"
CDS 592..882
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="ADC81899.1"
/db_xref="GI:289068784"
/translation="MEQAPEDQGPQREPYNEWALELLEELKNEAVRHFPRPWLHSLGQ
YIYETYGDTWTGVEAIIRILQQLLFIHFRIGCRHSRIGIIRQRRTRNGASRS"
gene 863..3486
/gene="tat"
CDS join(863..1077,3396..3486)
/gene="tat"
/codon_start="1"
/transl_table="1"
/product="tat protein"
/protein_id="ADC81900.1"
/db_xref="GI:289068785"
/translation="MEPVDPRLEPWKHPGSQPKTACTNCYCKKCCLHCQVCFIKKGLG
ISYGRKKRRQRRRPPQDSQTHQVSLSKQPASQPRGDPTGPKESKKKVERETKTDPED"
gene 1002..3670
/gene="rev"
CDS join(1002..1077,3396..3670)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="ADC81901.1"
/db_xref="GI:289068786"
/translation="MAGRSGDSDEDLLKTVRLIKYLYQSNPPPNPEGTRQARRNRRRR
WRERQRQIRKISGWILSNCLGRSEEPVPFQLPPLERLTLDCNEDCGTSGTQGVGNPQI
LVESPTVLEPGTKE"
gene 1094..1339
/gene="vpu"
CDS 1094..1339
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="ADC81902.1"
/db_xref="GI:289068787"
/translation="MQSLQILAIVALVVVTIIAIVVWTIVLIEYRKILRQRKIDRLID
RIRERAEDSGNESDGDQEELSELVERGHLAPWDIDDL"
gene 1257..3812
/gene="env"
CDS 1257..3812
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADC81903.1"
/db_xref="GI:289068788"
/translation="MRVTGIRKSCQNLWRGGILLLGILMICSTTEQLWVTIYYGVPVW
KEATTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEILLENVTENFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCSDLGNITNTNTTSSSGIEMERGEIKNCSFN
ITTSIRDKMQKQYATFYKLDLVSIDNTSEYRLISCNTSVITQACPKVTFEPIPIHYCA
PAGFAILKCKDKKFNGKGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENF
TNNAKTIIVQLNEFVEINCIRPNNNTRKSIHIGPGKAFYTTGEIIGDIRQAHCNISKT
KWNNTLSQIAKKLREQFGNNKTIVFNQSSGGDPEIETHSFNCGGEFFYCNTTQLFNST
WNNNSTWSSNSTGDNENITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGMIL
TRDGGENNTTEIFRPGGGDMRDNWRSELYKYKVVKIEPIGVAPTKAKRRVVQREKRAV
GMGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW
GIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNDIWDNMTWM
QWEREIDNYTSLIYTLIEESQNQQEKNEQDLLALDKWASLWSWFDITNWLWYIKIFIM
IIGGLVGLRIIFTVLSIVNRVRKGYSPLSFQTRLPTQRGPDRPEGIEEEGGERDKDRS
GRLVDGFLAIVWVDLRSLCLFSYHRLRDLLLIVTRIVELLGHRGWEILKYWWNLLQYW
SQELRNSAVSLLNATAIAVAEGTDRVIEFLQRAFRAFIHIPRRIRQGLERVLQ"
gene 3814..4436
/gene="nef"
/pseudo="nef"
CDS 3814..4436
/gene="nef"
/pseudo="nef"
/codon_start="1"
/transl_table="1"
BASE COUNT 1623 a 807 c 1117 g 1099 t
ORIGIN
1 ggggcagtag taatacaaga taatagtgac ataaaagtag tgccaagaag aaaagcaaag
61 atcattaggg attatggaaa acagatggca ggtgatgatt gtgtggcaag tagacaggat
121 gaggattaga acatggaaaa gtttagtaaa acaccatatg tatgtttcaa agaaagctaa
181 gggatggttt tatagacatc actatgaaag cactaatcca agaacaagtt cagaagtaca
241 catcccagta ggggaaggta gattgataat aacaacatat tggggtctgc atacaggaga
301 aagagactgg catttgggtc agggagtctc catagaatgg agggaaagga gatataggac
361 acaagtagac cctagtctag cagaccaact aattcatctg tattactttg attgtttttc
421 agaatctgct ataagaaatg ccatattagg acatatagtt agtcctagtt gtgattacca
481 agcaggacat aacaaggtag gatctctaca gtacttagca ctaacagcat taataaaacc
541 aaaaaagata aagccacctt tgcctagtgt tgcaaagttg acagaggata gatggaacaa
601 gccccagaag accaagggcc acagagggag ccatacaatg aatgggcact agagctttta
661 gaggagctta agaatgaagc tgtcagacat tttcccaggc catggcttca tagcttaggg
721 caatatatat atgaaactta tggggatact tggacaggag tggaagccat aataagaatt
781 ctgcaacaac tgctgtttat ccatttcaga attgggtgtc gacatagcag aataggcatt
841 attcgacaga ggagaacaag aaatggagcc agtagatcct agactagagc cctggaagca
901 tccaggaagt cagcctaaga ctgcttgtac caattgctat tgtaaaaaat gttgccttca
961 ttgccaagtt tgcttcataa aaaaaggctt aggcatctcc tatggcagga agaagcggag
1021 acagcgacga agacctcctc aagacagtca gactcatcaa gtatctctat caaagcagta
1081 agtagcgcat gtaatgcaat ctttacaaat attagcaata gtagcattag tagtagtaac
1141 aataatagca atagtagtgt ggaccatagt actcatagaa tataggaaaa tattaaggca
1201 aaggaaaata gacaggttaa ttgatagaat aagagaaaga gcagaagaca gtggcaatga
1261 gagtgacggg gatcaggaag agttgtcaga acttgtggag agggggcatc ttgctccttg
1321 ggatattgat gatctgtagt actacagaac agttatgggt cacgatctat tatggggtac
1381 cagtgtggaa agaagcaacc accactctat tttgtgcatc agatgctaaa gcatatgata
1441 cagaagcaca taatgtttgg gccacacatg cttgtgtacc cacagacccc aacccacaag
1501 aaatattatt ggaaaatgtg acagaaaatt ttaacatgtg gaaaaataac atggtagaac
1561 agatgcatga ggatataatc agtttatggg atcaaagcct aaagccatgt gtaaaattaa
1621 ccccactctg tgtcacttta aattgctctg atttaggaaa tattactaat accaatacca
1681 ctagtagtag tgggatagag atggagagag gagaaataaa aaactgctct ttcaatatca
1741 ccacaagcat aagagataag atgcaaaaac aatatgcaac tttttataaa cttgatttag
1801 tatcaataga taatactagc gaatataggt tgataagttg taacacctca gtcattacac
1861 aggcctgtcc aaaagtaaca tttgaaccaa ttcccataca ttattgtgcc ccggctggtt
1921 ttgcgattct aaagtgtaag gataaaaagt tcaatggaaa aggaccatgt aaaaatgtca
1981 gcacagtaca atgtacacat ggaattaggc cagtagtatc aactcaattg ctgttaaatg
2041 gcagtctagc agaagaagag gtagtaatta gatctgaaaa tttcacaaac aatgctaaaa
2101 ccataatagt acaactgaat gaatttgtag aaattaattg tataagaccc aacaacaata
2161 caagaaaaag tatacatata ggaccaggga aagcattcta tacaacagga gaaataatag
2221 gagatataag acaagcacat tgcaacatta gtaaaactaa atggaataac actttaagtc
2281 agatagctaa aaaattaaga gaacaatttg ggaataataa aacaatagtc tttaatcaat
2341 cctcaggagg ggacccagaa attgaaacac acagttttaa ctgtggaggg gaatttttct
2401 actgtaatac aacacaactg tttaattcaa cttggaataa taactcaact tggagtagta
2461 attcaacggg agataatgaa aatatcaccc tcccatgcag aataaaacaa attataaaca
2521 tgtggcagga agtaggaaaa gcaatgtatg cccctcccat cagaggacaa attagatgct
2581 catcaaatat tacagggatg attttaacaa gagatggtgg tgagaacaac accactgaga
2641 tcttcagacc tggaggagga gatatgaggg acaattggag aagtgaatta tataaatata
2701 aagtagtaaa aattgaacca ataggagtag cacccaccaa ggcaaagaga agagtggtgc
2761 agagagaaaa aagagcagtg ggaatgggag ctttgttcct tgggttcttg ggagcagcag
2821 gaagcactat gggcgcagca tcaataacgc tgacggtaca ggccaggcaa ttattgtctg
2881 gtatagtgca acagcagaat aatttgctga gagctattga ggcgcaacag catctgttgc
2941 aactcacagt ctggggcatc aagcagctcc aggcaagagt cctggctgtg gagagatacc
3001 taaaggatca acagctcctg ggaatttggg gctgctctgg aaaactcatt tgcaccaccg
3061 ctgtgccttg gaatgctagt tggagtaata aatctctgaa tgacatttgg gataatatga
3121 cctggatgca gtgggaaaga gaaattgaca attacacaag cttaatatac actttaattg
3181 aagaatcgca gaaccaacaa gaaaagaatg aacaagactt attggcatta gataaatggg
3241 caagtttatg gagttggttt gacataacga attggctgtg gtatataaaa atattcataa
3301 tgataatagg aggattagta ggtttaagaa taatttttac tgtactttct atagtgaata
3361 gagttaggaa gggatactca ccattatcat ttcagacccg cctcccaacc cagaggggac
3421 ccgacaggcc cgaaggaatc gaagaagaag gtggagagag agacaaagac agatccggaa
3481 gattagtgga tggattctta gcaattgtct gggtcgatct gaggagcctg tgccttttca
3541 gctaccaccg cttgagagac ttactcttga ttgtaacgag gattgtggaa cttctgggac
3601 acagggggtg ggaaatcctc aaatactggt ggaatctcct acagtattgg agccaggaac
3661 taaggaatag tgctgttagc ttgcttaatg ccacagccat agcagtagct gagggaacag
3721 atagggttat agaattctta caaagagctt ttagagcttt tatccatata cctagaagaa
3781 taagacaggg cttggaaagg gttttgcaat aagatgggtg gcaagtggtc aaaaagaatg
3841 ggatggccta ctgtaaggga aaaaatgaga cgaactagtc cagcagcaga tggggtgggg
3901 gcagtatccc gagacctgga aaaacatgga gcaattacaa gtagcaatac agcagctacc
3961 aatgctgatt gtgcctggct agaagcacaa gaggaagagg aagtgggttt tccagtcaga
4021 cctcaggtac ctttaagacc aatgacttac aagggagctt tagatcttag ccacttttta
4081 aaagaaaagg ggggactgga agggatgatt cactcccaaa acagacaaga tatccttgat
4141 ctgtgggtct accacacaca aggctacttc cctgattggc agaactacac accagggcca
4201 gggaccaggt ttccactgac ctttggatgg tgcttcaagc tagtaccact tgagccagag
4261 gaggtagaaa aggccaatga aggagagaac aactgcttgt tacaccctgt aagccagcat
4321 gggatggggg accctgagag agaagtgtta gtatggaaat ttgacagcaa gctagcattt
4381 catcacatgg cccgagagct gcatccggaa tacttcaaga actgaagaac tgctgacatc
4441 gagctttcta caagggactt tccgctgggg actttccagg ggaggcgtgg cctgggcggg
4501 actggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg
4561 gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact
4621 gcttaagcct caataaagct tgcctt
//
last modified: Tue May 31 10:56 2022