HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GU562055		    4660 bp    DNA     linear	VRL 06-APR-2010
DEFINITION  HIV-1 isolate ACTDM580208C6 from USA pol protein (pol) gene,
	    partial cds; and vif protein (vif), vpr protein (vpr), tat protein
	    (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein
	    (env), and nef protein (nef) genes, complete cds
ACCESSION   GU562055
VERSION     GU562055.1 GI:289068464
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 4660)
            Show all sequences for reference 1
  AUTHORS   Bar,K.J., Li,H., Chamberland,A., Tremblay,C., Routy,J.P.,
	    Grayson,T., Sun,C., Wang,S., Learn,G.H., Morgan,C.J.,
	    Schumacher,J.E., Haynes,B.F., Keele,B.F., Hahn,B.H. and Shaw,G.M.
  TITLE     Wide variation in the multiplicity of HIV-1 infection among
	    injection drug users.
  JOURNAL   J. Virol.. 84(12); 6241-7 (2010)
  PUBMED    20375173
REFERENCE   2 (bases 1 to 4660)
            Show all sequences for reference 2
  AUTHORS   Learn,G.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2010) Medicine, University of Alabama at
	    Birmingham, 720 20th Street South, Kaul 806, Birmingham, AL 35294,
	    USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code ACTDM580208 Sequence Name
	    ACTDM580208C6 Subtype B Sample date 8/10/1997 Patient sex M
	    Infection country CA Fiebig Stage VI DBID 1355680109
	    ##HIVDataBaseData-END## Sampling country is USA in GenBank
	    accession records, but data from the paper and authors clearly
	    indicate these sequences were from a Montreal, Canada cohort.
FEATURES             Location/Qualifiers
     source	     1..4660
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="ACTDM580208C6"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: CA"
		     /collection_date="10-Aug-1997"
		     /note="subtype: B"
     gene	     <1..129
		     /gene="pol"
     CDS	     <1..129
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADC81617.1"
		     /db_xref="GI:289068465"
		     /translation="GAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED"
     gene	     74..652
		     /gene="vif"
     CDS	     74..652
		     /gene="vif"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vif protein"
		     /protein_id="ADC81618.1"
		     /db_xref="GI:289068466"
		     /translation="MENRWQVMIVWQVDRMRIRTWNSLVKHHIYVSKKARKWSYKHHY
		     ESTNPRISSEVHIPLEDAKLIIKTYWGLHTGEREWHLGQGVSIEWRKKGYCTQVDPGL
		     ADQLIHLHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKKIK
		     PPLPSVTKLTEDRWNKPQKTKGHRGNHTMSGH"
     gene	     592..879
		     /gene="vpr"
     CDS	     592..879
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="ADC81619.1"
		     /db_xref="GI:289068467"
		     /translation="MEQAPEDQGPQREPYNEWTLELLEELKSEAVKHFPRPWLHSLGQ
		     YIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRRSTRNGASRS"
     gene	     860..3504
		     /gene="tat"
     CDS	     join(860..1074,3414..3504)
		     /gene="tat"
		     /codon_start="1"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ADC81620.1"
		     /db_xref="GI:289068468"
		     /translation="MEPVDPRLEPWNHPGSQPRTACNNCYCKKCCLHCQVCFTRKGLG
		     ISYGRKKRRQRRRAPQDRQTNQGSLPKQPASQPRGDPTGPKESKKKVERETETDPVD"
     gene	     999..3688
		     /gene="rev"
     CDS	     join(999..1074,3414..3688)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ADC81621.1"
		     /db_xref="GI:289068469"
		     /translation="MAGRSGDNDDELLKTVRLIKVLYQSNPLPSPEGTRQARRNRRRR
		     WRERQRQIRSISERILDTYLGRSVEPVLLQLPPLERLTLDCSEDCGTSGTQGVGSPQI
		     LVESPAVLEPGTKE"
     gene	     1091..1336
		     /gene="vpu"
     CDS	     1091..1336
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ADC81622.1"
		     /db_xref="GI:289068470"
		     /translation="MQPLQIAAIVALVVVAIIAIVVWSIVLIEYRKILRQRKIDRLID
		     RIRERAEDSGNESEGDQEELSALVEMGHHAPWDVDDL"
     gene	     1254..3830
		     /gene="env"
     CDS	     1254..3830
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADC81623.1"
		     /db_xref="GI:289068471"
		     /translation="MKAKGIRKNYQHLWRWGIMLLGMLMICSATEKLWVTVYYGVPVW
		     KETTTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWENNMVEQ
		     MQEDIISLWDQSLKPCVKLTPLCVTLSCTEVRKDTNTTNSSLGMMKEEMKNCSFNITT
		     SIKDKMKKEYALFYRLDVVPIDNGNNNITKNNTRYRLINCNTSVITQACPKVSFEPIP
		     IHYCAPAGFAILKCNNKTFNGKGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEETVI
		     RSSNFSDNAKTIIVQLNNSVEINCTRPNNNTRKSIPMGPGKAFYATGDIIGDIRQAHC
		     NLSREEWNNTLSKIVIKLREQFGNKTIVFKQASGGDPEIVMHSFNCGGEFFYCNSTQL
		     FNSTWNVSSTWNSTEESNDTITLPCRIKQIINMWQKVGKAMYAPPIRGQIKCSSKITG
		     ILLTRDGGNNTNETETETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQ
		     REKRAVGTIGAMFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQH
		     LLQLTVWGIKQLQARLLAVERYLQDQQLLGIWGCSGKLICTTAVPWNDSWSNKSLDKI
		     WNNMTWMEWDREINNYTNLIYTLIEKSQNQQEKNEQELLELDKWASLWNWFDITNWLW
		     YIKIFIIIVGGLVGLRIVFTVLSIVNRVRQGYSPLSLQTRFPAPRGPDRPEGIEEEGG
		     ERDRDRSGRLVNGFLTLIWDDLWSLCFFSYRRLRDLLLIVAKIVELLGRRGWEALKYW
		     WNLLQYWSQELKNSAVSLLNTITIVVAEGTDRIIEVIQRTCRAILHIPTRIRQGLERA
		     LL"
     gene	     3832..4452
		     /gene="nef"
     CDS	     3832..4452
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ADC81624.1"
		     /db_xref="GI:289068472"
		     /translation="MGGKWSKSSLVGWPTVRERMKRAEPAAEGVGAVSQDLDKHGAIT
		     SNNTAATNANCAWLEAQEEEDVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIH
		     SQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPGQVEEATARE
		     NTSLLHPISQHGIEDPEREVLMWKFDSRLAFHHMARELHPEYYKDC"
BASE COUNT     1618 a	 822 c	 1121 g   1099 t
ORIGIN
       1 ggggcagtag taatacaaga taatagtgac ataaaagtag tgccaagaag gaaagcaaaa 
      61 atcattagag attatggaaa acagatggca ggtgatgatt gtgtggcaag tagacaggat 
     121 gaggattaga acatggaaca gtttagtaaa acaccatata tatgtttcaa agaaagctag 
     181 gaaatggagt tataaacatc actatgaaag tactaatcca agaataagtt cagaagtaca 
     241 catcccacta gaggatgcta aattgataat aaaaacatat tggggtctgc atacaggaga 
     301 aagagaatgg catctgggcc agggagtctc catagaatgg aggaaaaagg gatattgcac 
     361 acaagtagac cctggcctag cagaccaact aattcatctg cattattttg attgtttttc 
     421 agaatctgct ataagaaatg ccatattagg acatagagtt agtcctaggt gtgaatatca 
     481 agcaggacat aacaaggtag gatctctaca atacctagca ctaacagcat taataacacc 
     541 aaaaaagata aagccacctc tgcctagtgt tacgaaacta acagaggata gatggaacaa 
     601 gccccagaag accaagggcc acagagggaa ccatacaatg agtggacact agagctttta 
     661 gaggagctta agagtgaagc tgttaaacat tttcctaggc catggctcca tagcttagga 
     721 caatatatct atgaaactta tggggatact tgggcaggag tggaagccat aataagaatt 
     781 ctgcaacaac tgctgtttat tcatttcaga attgggtgtc aacatagcag aataggcatt 
     841 attcggagga gcacaagaaa tggagccagt agatcctaga ctagaaccct ggaatcatcc 
     901 aggaagtcag cctaggactg cttgtaataa ttgctattgt aaaaagtgtt gccttcattg 
     961 ccaagtttgc ttcacacgaa aaggcttagg catctcctat ggcaggaaga agcggagaca 
    1021 acgacgacga gctcctcaag accgtcagac taatcaaggt tctctaccaa agcagtgagt 
    1081 agtacatgta atgcaacctt tacaaatagc agcaatagta gcattagtag tagtagcaat 
    1141 aatagcaata gttgtgtgga gcatagtact catagaatat aggaaaatat taagacaaag 
    1201 aaaaatagac aggctaattg atagaataag agaaagagca gaagacagtg gcaatgaaag 
    1261 cgaaggggat caggaagaat tatcagcact tgtggagatg gggcatcatg ctccttggga 
    1321 tgttgatgat ctgtagtgct acagaaaaat tgtgggttac agtctattat ggggtacctg 
    1381 tgtggaaaga aacaaccact actctatttt gtgcatcaga tgctaaagca tatgatacag 
    1441 aggtacataa tgtttgggcc acacatgcct gtgtacccac agaccccaac ccacaagaag 
    1501 tagtattggg aaatgtgaca gaaaatttta acatgtggga aaataacatg gtagaacaga 
    1561 tgcaggagga tataatcagt ttatgggatc aaagcctaaa accatgtgta aaattaaccc 
    1621 cactctgtgt taccttaagt tgcactgagg tgaggaaaga tactaatacc accaatagta 
    1681 gtttgggaat gatgaaggaa gaaatgaaaa actgctcttt caatatcacc acaagcataa 
    1741 aagataagat gaagaaagaa tatgcacttt tttatagact tgatgtagta ccaatagata 
    1801 atggtaataa taatattact aaaaataata ccaggtatag gttgataaat tgtaacacct 
    1861 cagtcattac acaggcctgt ccaaaggtat cctttgagcc aattcccata cattattgtg 
    1921 ccccagctgg ttttgcgatt ctaaagtgta acaataagac attcaatgga aaaggaccat 
    1981 gtacaaatgt aagcacagta caatgtacac atggaattag gccagtagtg tcaactcaac 
    2041 tgctgttaaa tggcagtcta gcagaagaag agacagtaat tagatccagc aatttctcgg 
    2101 acaatgccaa aaccataata gtacagctca ataattctgt agaaattaat tgtacaagac 
    2161 ccaacaacaa tacaagaaag agtataccta tgggaccagg gaaagcattt tatgcaacag 
    2221 gagatataat aggagatata agacaagcac attgtaacct tagtagagaa gaatggaata 
    2281 acactttaag caagatagtt ataaaattaa gagaacagtt tgggaataaa acaatagtct 
    2341 ttaagcaagc ctcaggaggg gacccagaaa ttgtaatgca cagttttaat tgtggagggg 
    2401 aatttttcta ctgtaattca acacaactgt ttaatagtac ttggaatgtt agtagtactt 
    2461 ggaatagtac tgaagagtca aatgacacta ttacactccc atgtagaata aaacaaatta 
    2521 taaacatgtg gcagaaagta ggaaaagcca tgtatgcccc tcccatcaga ggacaaatta 
    2581 aatgttcatc aaaaattaca gggatactat taacaagaga tggtggtaat aacacgaacg 
    2641 agactgagac tgagaccttc agacctggag gaggagatat gagggacaat tggagaagtg 
    2701 aattatataa atataaagta gtaaaaattg aaccattagg agtagcaccc accaaggcaa 
    2761 agagaagagt ggtgcagaga gaaaaaagag cagtgggaac aataggagct atgttccttg 
    2821 ggttcttggg agcagcagga agcactatgg gcgcagcgtc aatgacgctg acggtacagg 
    2881 ccagacaatt attgtctggt atagtgcaac agcagaacaa tttgctgagg gctattgagg 
    2941 cgcaacagca tctgttgcaa ctcacagtct ggggcatcaa gcagctccag gcaagactcc 
    3001 tggctgtgga aagataccta caggatcaac agctcctagg gatttggggt tgctctggaa 
    3061 aactcatttg caccactgct gtgccttgga atgatagttg gagtaataaa tctctggata 
    3121 agatttggaa taacatgacc tggatggagt gggatagaga aattaacaat tacacaaact 
    3181 taatatatac cttaattgaa aaatcgcaaa accaacaaga aaagaatgaa caagaattat 
    3241 tggaattaga taagtgggca agtttatgga attggtttga cataacaaac tggttgtggt 
    3301 atataaaaat attcataata atagtaggag gcttggtagg tttaagaata gtttttactg 
    3361 tactttctat agtgaataga gttaggcagg gatactcacc attatcattg cagacccgct 
    3421 tcccagcccc gaggggaccc gacaggcccg aaggaatcga agaagaaggt ggagagagag 
    3481 acagagacag atccggtcga ttagtgaacg gattcttgac acttatctgg gacgatctgt 
    3541 ggagcctgtg cttcttcagc taccgccgct tgagagactt actcttgatt gtagcgaaga 
    3601 ttgtggaact tctgggacgc agggggtggg aagccctcaa atattggtgg aatctcctgc 
    3661 agtattggag ccaggaacta aagaatagtg ctgttagctt gcttaatacc ataactatag 
    3721 tagtagctga gggaacagat aggattatag aagtaataca aagaacttgt agagctattc 
    3781 tccacatacc tacaagaata agacagggct tggaaagggc tttgctataa gatggggggc 
    3841 aagtggtcaa aaagtagtct agttggatgg cctactgtaa gggaaagaat gaaacgagct 
    3901 gagccagcag cagagggggt gggagcagta tctcaagacc tggataaaca tggagcaatc 
    3961 acaagtaaca atacagcagc tacaaatgct aattgtgcct ggctagaagc acaagaggag 
    4021 gaggacgtgg gtttcccagt cagacctcag gtacctttaa gaccaatgac ttacaaggga 
    4081 gctttagatc ttagccactt tttaaaagaa aaggggggac tggaagggct aattcactcc 
    4141 cagaaaagac aagatatcct tgatctgtgg atctaccaca cacaaggcta cttccctgat 
    4201 tggcagaact acacaccagg gccaggggtc agatttccat tgacctttgg atggtgcttc 
    4261 aagctagtac cagttgatcc agggcaggta gaagaggcca ctgcaagaga gaacaccagc 
    4321 ttgttacacc ctataagcca gcatgggata gaagacccgg agagagaagt gttaatgtgg 
    4381 aagtttgaca gccgcctagc ctttcatcac atggcccgag agctgcatcc ggagtactac 
    4441 aaagactgct gacatcgagt ttctacaagg gactttccac tggggacttt ccagggaggc 
    4501 gtggcctggg cgggactggg gagtggcgag ccctcagatg ctgcatataa gcagctgctt 
    4561 tttgcctgta ctgggtctct ctggttagac cagatttgag cctgggagct ctctggctaa 
    4621 ctagggaacc cactgcttaa gcctcaataa agcttgcctt 
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.