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LOCUS GU562048 4660 bp DNA linear VRL 06-APR-2010
DEFINITION HIV-1 isolate ACTDM580208B2 from USA pol protein (pol) gene,
partial cds; and vif protein (vif), vpr protein (vpr), tat protein
(tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein
(env), and nef protein (nef) genes, complete cds
ACCESSION GU562048
VERSION GU562048.1 GI:289068402
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 4660)
Show all sequences for reference 1
AUTHORS Bar,K.J., Li,H., Chamberland,A., Tremblay,C., Routy,J.P.,
Grayson,T., Sun,C., Wang,S., Learn,G.H., Morgan,C.J.,
Schumacher,J.E., Haynes,B.F., Keele,B.F., Hahn,B.H. and Shaw,G.M.
TITLE Wide variation in the multiplicity of HIV-1 infection among
injection drug users.
JOURNAL J. Virol.. 84(12); 6241-7 (2010)
PUBMED 20375173
REFERENCE 2 (bases 1 to 4660)
Show all sequences for reference 2
AUTHORS Learn,G.H.
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2010) Medicine, University of Alabama at
Birmingham, 720 20th Street South, Kaul 806, Birmingham, AL 35294,
USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code ACTDM580208 Sequence Name
ACTDM580208B2 Subtype B Sample date 8/10/1997 Patient sex M
Infection country CA Fiebig Stage VI DBID 1228979210
##HIVDataBaseData-END## Sampling country is USA in GenBank
accession records, but data from the paper and authors clearly
indicate these sequences were from a Montreal, Canada cohort.
FEATURES Location/Qualifiers
source 1..4660
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="ACTDM580208B2"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: CA"
/collection_date="10-Aug-1997"
/note="subtype: B"
gene <1..129
/gene="pol"
CDS <1..129
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADC81562.1"
/db_xref="GI:289068403"
/translation="GAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED"
gene 74..652
/gene="vif"
CDS 74..652
/gene="vif"
/codon_start="1"
/transl_table="1"
/product="vif protein"
/protein_id="ADC81563.1"
/db_xref="GI:289068404"
/translation="MENRWQVMIVWQVDRMKIKTWHSLVKHHMYISKKAKKWVYRHHY
ESTHPRISSEVHIPLEDAKLIIKTYWGLHTGEREWHLGQGVSIEWRKKRYCTQVDPGL
ADQLIHLHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKKIK
PPLPSVTKLTEDRWNKPQKTKGHRGNHTMSGH"
gene 592..879
/gene="vpr"
CDS 592..879
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="ADC81564.1"
/db_xref="GI:289068405"
/translation="MEQAPEDQGPQREPYNEWTLELLEELKSEAVKHFPRPWLHSLGQ
YIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRRTARNGASRS"
gene 860..3504
/gene="tat"
CDS join(860..1074,3414..3504)
/gene="tat"
/codon_start="1"
/transl_table="1"
/product="tat protein"
/protein_id="ADC81565.1"
/db_xref="GI:289068406"
/translation="MEPVDPRLEPWNHPGSQPRTACNNCYCKKCCLHCQVCFTRKGLG
ISYGRKKRRQRRRAPQDRQTNQGSLPKQPASQPRGDPTGPKESKKKVERETETDPVD"
gene 999..3688
/gene="rev"
CDS join(999..1074,3414..3688)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="ADC81566.1"
/db_xref="GI:289068407"
/translation="MAGRSGDNDDELLKTVRLIKVLYQSNPLPSPEGTRQARRNRRRR
WRERQRQIRSISERILDTYLGRSVEPVLLQLPPLERLTLDCSEDCGTSGTQGVGSPQI
LVESPAVLEPGTKE"
gene 1091..1336
/gene="vpu"
CDS 1091..1336
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="ADC81567.1"
/db_xref="GI:289068408"
/translation="MQPLQIAAIVALVVVAIIAIVVWSIVLIEYRKILRQRKIDRLID
RIRERAEDSGNESEGDQEELSALVEMGHHAPWDVDDL"
gene 1254..3830
/gene="env"
CDS 1254..3830
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADC81568.1"
/db_xref="GI:289068409"
/translation="MKAKGIRKNYQHLWRWGIMLLGMLMICSATEKLWVTVYYGVPVW
KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNNMVEQ
MQEDIISLWDQSLKPCVKLTPLCVTLSCTEVRKDTNTTNSSLGMMKEEMKNCSFNITT
SIKDKMKKEYALFYRLDVVPIDNGNNNITKNNTRYRLINCNTSVITQACPKVSFEPIP
IHYCAPAGFAILKCNNRTLNGKGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEKIVI
RSSNFSDNAKTIIVQLNNSVEINCTRPNNKTRKSIPMGPGRAFYATGDIIGDIRQAHC
NLSRKEWNNTLSKIVIKLREQFGNKTIVFKQASGGDPEIVMHSFNCGGEFFYCNSTQL
FNSTWNVSSTWNSTEESNDTIILPCRIKQIINMWQKVGKAMYAPPIRGQIKCSSKITG
ILLTRDGGNNTNETETETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQ
REKRAVGTIGAMFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQH
LLQLTVWGIKQLQARLLAVERYLQDQQLLGIWGCSGKLICTTAVPWNDSWSNKSLDKI
WNNMTWMEWDREINNYTNLIYTLIEKSQNQQEKNEQELLELDKWASLWNWFDITNWLW
YIKIFIIIVGGLVGLRIVFTVLSIVNRVRQGYSPLSLQTRFPAPRGPDRPEGIEEEGG
ERDRDRSGRLVNGFLTLIWDDLWSLCFFSYRRLRDLLLIVAKIVELLGRRGWEALKYW
WNLLQYWSQELKNSAVSLLNTITIVVAEGTDRIIEVIQRTCRAILHIPTRIRQGLERA
LL"
gene 3832..4452
/gene="nef"
CDS 3832..4452
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ADC81569.1"
/db_xref="GI:289068410"
/translation="MGGKWSKSSLVGWPTVRERMKRAEPAAEGVGAVSQDLDKHGAIT
SNNTAATNAACAWLEAQEEEDVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIH
SQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPGQVEEATARE
NTSLLHPISQHGIEDPEREVLMWKFDSRLAFHHMARELHPEYYKDC"
BASE COUNT 1613 a 827 c 1121 g 1099 t
ORIGIN
1 ggggcagtag taatacaaga taatagtgac ataaaagtag tgccaagaag gaaagcaaaa
61 atcattagag attatggaaa acagatggca ggtgatgatt gtgtggcaag tagacaggat
121 gaagattaaa acatggcaca gtttagtaaa acaccatatg tatatttcaa agaaagctaa
181 gaaatgggtt tatagacatc actatgaaag cactcatcca agaataagtt cagaagtaca
241 catcccacta gaggatgcta aattgataat aaaaacatat tggggtctgc atacaggaga
301 aagagaatgg catctgggcc agggagtctc catagaatgg agaaaaaaga gatattgcac
361 acaagtagac cctggccttg cagaccaact aattcatctg cattattttg attgtttttc
421 agaatctgct ataagaaatg ccatattagg acatagagtt agtcctaggt gtgaatatca
481 agcaggacat aacaaggtag gatctctaca atacctagca ctaacagcat taataacacc
541 aaaaaagata aagccacctc tgcctagtgt tacgaaacta acagaggata gatggaacaa
601 gccccagaag accaagggcc acagagggaa ccatacaatg agtggacact agagctttta
661 gaggagctta agagtgaagc tgttaaacat tttcctaggc catggctcca tagcttagga
721 caatatatct atgaaactta tggggatact tgggcaggag tggaagccat aatcagaatt
781 ctgcaacaac tgctgtttat tcatttcaga attgggtgtc aacatagcag aataggcatt
841 attcggagga cagcaagaaa tggagccagt agatcctaga ctagaaccct ggaatcatcc
901 aggaagtcag cctaggactg cctgtaataa ttgctattgt aaaaagtgtt gccttcattg
961 ccaagtttgc ttcacacgaa aaggcttagg catctcctat ggcaggaaga agcggagaca
1021 acgacgacga gctcctcaag accgtcagac taatcaaggt tctctaccaa agcagtgagt
1081 agtacatgta atgcaacctt tacaaatagc agcaatagta gcattagtag tagtagcaat
1141 aatagcaata gttgtgtgga gcatagtact catagaatat aggaaaatat taagacaaag
1201 aaaaatagac aggctaattg atagaataag agaaagagca gaagacagtg gcaatgaaag
1261 cgaaggggat caggaagaat tatcagcact tgtggagatg gggcatcatg ctccttggga
1321 tgttgatgat ctgtagtgct acagaaaaat tgtgggttac agtctattat ggggtacctg
1381 tgtggaaaga ggcaaccact actctatttt gtgcatcaga tgctaaagca tatgatacag
1441 aggtacataa tgtttgggcc acacatgcct gtgtacccac agaccccaac ccacaagaag
1501 tagtattggg aaatgtgaca gaaaatttta acatgtggaa aaataacatg gtagaacaga
1561 tgcaggagga tataatcagt ttatgggatc aaagcctaaa accatgtgta aaattaaccc
1621 cactctgtgt taccttaagt tgcactgagg tgaggaaaga tactaatacc accaatagta
1681 gtttgggaat gatgaaggaa gaaatgaaaa actgctcttt caatatcacc acaagcataa
1741 aagataagat gaagaaagaa tatgcacttt tttatagact tgatgtagta ccaatagata
1801 atggtaataa taatattact aaaaataata ccaggtatag gttgataaat tgtaacacct
1861 cagtcattac acaggcctgt ccaaaggtat cctttgagcc aattcccata cattattgtg
1921 ccccagctgg ttttgcgatt ctaaagtgta acaataggac actcaatgga aaaggaccat
1981 gtacaaatgt aagcacagta caatgtacac atggaattag gccagtagtg tcaactcaac
2041 tgctgttaaa tggcagtcta gcagaagaaa agatagtaat tagatccagc aatttctcgg
2101 acaatgccaa aaccataata gtacagctca ataattctgt agaaattaat tgtacaagac
2161 ccaacaacaa gacaagaaag agtataccta tgggaccagg gagagcattt tatgcaacag
2221 gagatataat aggagatata agacaagcac attgtaacct tagtagaaaa gaatggaata
2281 acactttaag caagatagtt ataaaattaa gagaacagtt tgggaataaa acaatagtct
2341 ttaagcaagc ctcaggaggg gacccagaaa ttgtaatgca cagttttaat tgtggagggg
2401 aatttttcta ctgtaattca acacaactgt ttaatagtac ttggaatgtt agtagtactt
2461 ggaatagtac tgaagagtca aatgacacta ttatactccc atgtaggata aaacaaatta
2521 taaacatgtg gcagaaagta ggaaaagcca tgtatgcccc tcccatcaga ggacaaatta
2581 aatgttcatc aaaaattaca gggatactat taacaagaga tggtggtaat aacacgaacg
2641 agactgagac tgagaccttc agacctggag gaggagatat gagggacaat tggagaagtg
2701 aattatataa atataaagta gtaaaaattg aaccattagg agtagcaccc accaaggcaa
2761 agagaagagt ggtgcagaga gaaaaaagag cagtgggaac aataggagct atgttccttg
2821 ggttcttggg agcagcagga agcactatgg gcgcagcgtc aatgacgctg acggtacagg
2881 ccagacaatt attgtctggt atagtgcaac agcagaacaa tttgctgagg gctattgagg
2941 cgcaacagca tctgttgcaa ctcacagtct ggggcatcaa gcagctccag gcaagactcc
3001 tggctgtgga aagataccta caggatcaac agctcctagg gatttggggt tgctctggaa
3061 aactcatttg caccactgct gtgccttgga atgatagttg gagtaataaa tctctggata
3121 agatttggaa taacatgacc tggatggagt gggatagaga aattaacaat tacacaaact
3181 taatatatac cttaattgaa aaatcgcaaa accaacaaga aaagaatgaa caagaattat
3241 tggaattaga taagtgggca agtttatgga attggtttga cataacaaac tggttgtggt
3301 atataaaaat attcataata atagtaggag gcttggtagg tttaagaata gtttttactg
3361 tactttctat agtgaataga gttaggcagg gatactcacc attatcattg cagacccgct
3421 tcccagcccc gaggggaccc gacaggcccg aaggaatcga agaagaaggt ggagagagag
3481 acagagacag atccggtcga ttagtgaacg gattcttgac acttatctgg gacgatctgt
3541 ggagcctgtg cttcttcagc taccgccgct tgagagactt actcttgatt gtagcgaaga
3601 ttgtggaact tctgggacgc agggggtggg aagccctcaa atattggtgg aatctcctgc
3661 agtattggag ccaggaacta aagaatagtg ctgttagctt gcttaatacc ataactatag
3721 tagtagctga gggaacagat aggattatag aagtaataca aagaacttgt agagctattc
3781 tccacatacc tacaagaata agacagggct tggaaagggc tttgctataa gatggggggc
3841 aagtggtcaa aaagtagtct agttggatgg cctactgtaa gggaaagaat gaaacgagct
3901 gagccagcag cagagggggt gggagcagta tctcaagacc tggataaaca tggagcaatc
3961 acaagtaaca atacagcagc tacaaatgct gcttgtgcct ggctagaagc acaagaggag
4021 gaggacgtgg gtttcccagt cagacctcag gtacctttaa gaccaatgac ttacaaggga
4081 gctttagatc ttagccactt tttaaaagaa aaggggggac tggaagggct aattcactcc
4141 cagaaaagac aagatatcct tgatctgtgg atctaccaca cacaaggcta cttccctgat
4201 tggcagaact acacaccagg gccaggggtc agatttccac tgacctttgg atggtgcttc
4261 aagttagtac cagttgatcc agggcaggta gaagaggcca ctgcaagaga gaacaccagc
4321 ttgttacacc ctataagcca gcatgggata gaagacccgg agagagaagt gttaatgtgg
4381 aagtttgaca gccgcctagc ctttcatcac atggcccgag agctgcatcc ggagtactac
4441 aaagactgct gacatcgagc ttctacaagg gactttccac tggggacttt ccagggaggt
4501 gtggcctggg cgggactggg gagtggcgag ccctcagatg ctgcatataa gcagctgctt
4561 tttgcctgta ctgggtctct ctggttagac cagatttgag cctgggagct ctctggctaa
4621 ctagggaacc cactgcttaa gcctcaataa agcttgcctt
//
last modified: Tue May 31 10:56 2022