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LOCUS GU471376 346 bp RNA linear VRL 19-JUL-2010
DEFINITION HIV-1 isolate ZPHI90-01 from Switzerland envelope glycoprotein
(env) gene, partial cds
ACCESSION GU471376
VERSION GU471376.1 GI:300510218
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 346)
Show all sequences for reference 1
AUTHORS Rieder,P., Joos,B., von Wyl,V., Kuster,H., Grube,C., Leemann,C.,
Boni,J., Yerly,S., Klimkait,T., Burgisser,P., Weber,R., Fischer,M.
and Gunthard,H.F.
CONSRTM Swiss HIV Cohort Study
TITLE HIV-1 transmission after cessation of early antiretroviral therapy
among men having sex with men
JOURNAL AIDS 24 (8), 1177-1183 (2010)
PUBMED 20386427
REFERENCE 2 (bases 1 to 346)
Show all sequences for reference 2
AUTHORS Joos,B.
CONSRTM Swiss HIV Cohort Study
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) Infectious Diseases, University Hospital
Zurich, Ramistr. 100, Zurich CH-8091, Switzerland
FEATURES Location/Qualifiers
source 1..346
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="ZPHI90-01"
/isolation_source="patient ZPHI90 2005-09-20 plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Switzerland"
/collection_date="20-Sep-2005"
/note="subtype: B"
gene <1..>346
/gene="env"
CDS <1..>346
/gene="env"
/note="gp120; C2-V3-C3 region"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADK24374.1"
/db_xref="GI:300510219"
/translation="THGIRPVVSTQLLLNGSLAEEEVIVRSENFTDNTKNIIVQLKDS
VKINCTRPNNNTRKSIHIAPGRAFFATGSIIGDIRRAYCNISRTDWNNTLNQTVIALR
KQFRNKTIIFKPP"
BASE COUNT 149 a 55 c 62 g 80 t
ORIGIN
1 gtacacatgg aattaggcca gtagtgtcaa ctcaactgct gctaaatggt agtctggcag
61 aagaagaggt aatagttaga tctgaaaatt tcacagacaa tactaaaaac ataatagtac
121 agctaaaaga ctctgtaaaa attaattgca caagacccaa taacaataca aggaaaagca
181 tacatatagc accagggaga gcattttttg caacaggaag tataatagga gatataagac
241 gagcatattg taacattagt agaacagatt ggaataacac tttaaaccag acagttatag
301 cattaagaaa acaatttagg aacaaaacaa taatctttaa gcctcc
//
last modified: Tue May 31 10:56 2022