HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GU471376		     346 bp    RNA     linear	VRL 19-JUL-2010
DEFINITION  HIV-1 isolate ZPHI90-01 from Switzerland envelope glycoprotein
	    (env) gene, partial cds
ACCESSION   GU471376
VERSION     GU471376.1 GI:300510218
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 346)
            Show all sequences for reference 1
  AUTHORS   Rieder,P., Joos,B., von Wyl,V., Kuster,H., Grube,C., Leemann,C.,
	    Boni,J., Yerly,S., Klimkait,T., Burgisser,P., Weber,R., Fischer,M.
	    and Gunthard,H.F.
  CONSRTM   Swiss HIV Cohort Study
  TITLE     HIV-1 transmission after cessation of early antiretroviral therapy
	    among men having sex with men
  JOURNAL   AIDS 24 (8), 1177-1183 (2010)
  PUBMED    20386427
REFERENCE   2 (bases 1 to 346)
            Show all sequences for reference 2
  AUTHORS   Joos,B.
  CONSRTM   Swiss HIV Cohort Study
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2010) Infectious Diseases, University Hospital
	    Zurich, Ramistr. 100, Zurich CH-8091, Switzerland
FEATURES             Location/Qualifiers
     source	     1..346
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="ZPHI90-01"
		     /isolation_source="patient ZPHI90 2005-09-20 plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Switzerland"
		     /collection_date="20-Sep-2005"
		     /note="subtype: B"
     gene	     <1..>346
		     /gene="env"
     CDS	     <1..>346
		     /gene="env"
		     /note="gp120; C2-V3-C3 region"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADK24374.1"
		     /db_xref="GI:300510219"
		     /translation="THGIRPVVSTQLLLNGSLAEEEVIVRSENFTDNTKNIIVQLKDS
		     VKINCTRPNNNTRKSIHIAPGRAFFATGSIIGDIRRAYCNISRTDWNNTLNQTVIALR
		     KQFRNKTIIFKPP"
BASE COUNT	149 a	  55 c	   62 g     80 t
ORIGIN
       1 gtacacatgg aattaggcca gtagtgtcaa ctcaactgct gctaaatggt agtctggcag 
      61 aagaagaggt aatagttaga tctgaaaatt tcacagacaa tactaaaaac ataatagtac 
     121 agctaaaaga ctctgtaaaa attaattgca caagacccaa taacaataca aggaaaagca 
     181 tacatatagc accagggaga gcattttttg caacaggaag tataatagga gatataagac 
     241 gagcatattg taacattagt agaacagatt ggaataacac tttaaaccag acagttatag 
     301 cattaagaaa acaatttagg aacaaaacaa taatctttaa gcctcc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.