HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GU330296		    2595 bp    DNA     linear	VRL 24-SEP-2011
DEFINITION  HIV-1 isolate 04013171_3_B22 from USA envelope glycoprotein (env)
	    gene, complete cds; and vpu protein (vpu), rev protein (rev), and
	    tat protein (tat) genes, partial cds
ACCESSION   GU330296
VERSION     GU330296.1 GI:347350113
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2595)
            Show all sequences for reference 1
  AUTHORS   Li,H., Bar,K.J., Wang,S., Decker,J.M., Chen,Y., Sun,C.,
	    Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Morgan,C.J.,
	    Schumacher,J.E., Hraber,P., Giorgi,E.E., Bhattacharya,T.,
	    Korber,B.T., Eron,J., Perelson,A.S., Eron,J.J., Cohen,M.S.,
	    Hicks,C.B., Haynes,B.F., Markowitz,M., Keele,B.F., Hahn,B.H. and
	    Shaw,G.M.
  TITLE     High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
  JOURNAL   PLoS Pathog. 6 (5), E1000890 (2010)
  PUBMED    20485520
REFERENCE   2 (bases 1 to 2595)
            Show all sequences for reference 2
  AUTHORS   Learn,G.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2009) Department of Medicine, University of
	    Alabama at Birmingham, 720 20th Street South, KAUL 852, Birmingham,
	    AL 35294, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 04013171 Sequence Name
	    04013171_3_B22 Subtype B Sample date 2/6/2002 Patient sex M
	    Infection country USA Fiebig Stage IV DBID 81214996
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2595
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="04013171_3_B22"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="06-Feb-2002"
		     /note="subtype: B"
     gene	     1..2595
		     /gene="env"
     CDS	     1..2595
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEO80515.1"
		     /db_xref="GI:347350117"
		     /translation="MKVKGIRKNYQHLWRWGTMLTMLLGMLMICSVTGQLWVTVYYGV
		     PVWKEATTTLFCASDAKAYKTEVHNVWATHACVPTDPSPQEVALENVTEPFNMWKNDM
		     VEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDYNYNTTNNSSLEEMKGEVKECSFNI
		     TTSLRDKWQKEYALFYKLDVVPIDNGTTYRLINCNTSVITQACPKVSFEPIPIHYCTP
		     AGFALLKCNDKNFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEGIVIRSENFT
		     NNAKTIIVQLKDPVEINCTRPGNNTRKSIHPGPGGAIYATGAIIGDIRRAHCIISGTK
		     WNNTLGQIVKKLGEQFNTTKIIFNHSSGGDPEIVMHSFNCGGEFFYCNSTPLFNSSWT
		     SNGTSNGTWINYNNNTKENITLLCRIKQIINMWQEVGKAMYAPPIRGEISCLSNITGL
		     LLTRDGGINGSNNETFRPGGGNMKDNWRSELYKYKVVQIEPLGVAPTQAKRRVVQREK
		     RAVGTLGAMFLGFLGAAGSTMGAASMALTVQARQLLSGIVQQQNNLLRAIEAQQHMLQ
		     LTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNVSWSNNRSLDKNDN
		     RSLYYIWDNMTWMEWEREIDNYTGIIYNLIEQSQNQQEKNEQELLELDKWASLWTWFD
		     ISNWLWYIRIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTLLPVPRGPDRPEG
		     IEEGGGEQDRGRSNRLVHGFLALIWDDLRSLCLFSYHRLRDLLLIVARIVELLGRRGW
		     EILKYWWNLLQYWNQELKNSAVSLLNATAIAVAEGTDRVIEVAQRIFRAFLHVPRRIR
		     QGFERCLL"
     gene	     <1..92
		     /gene="vpu"
     CDS	     <1..92
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AEO80514.1"
		     /db_xref="GI:347350116"
		     /translation="ESEGDQEELSALVEMGHHAHHAPWDVDDL"
     gene	     <2179..2453
		     /gene="rev"
     CDS	     <2179..2453
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEO80513.1"
		     /db_xref="GI:347350115"
		     /translation="PPPSPEGTRQARRNRRRRWRARQRQIQSISAWILSTHLGRSTEP
		     VSLQLPPLERLTLDCSEDCGTSGTQGVGNPQVLVESPTILESGTKE"
     gene	     <2179..2269
		     /gene="tat"
     CDS	     <2179..2269
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AEO80512.1"
		     /db_xref="GI:347350114"
		     /translation="PSSQSRGDPTGPKESKKEVESKTEADPID"
BASE COUNT	903 a	 440 c	  597 g    655 t
ORIGIN
       1 atgaaagtga aggggatcag gaagaattat cagcacttgt ggagatgggg caccatgctc 
      61 accatgctcc ttgggatgtt gatgatctgt agtgttacag gacaattgtg ggtcacagtc 
     121 tattatggag tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct 
     181 aaggcatata agacagaggt acataatgtt tgggccacac atgcctgtgt acccacagac 
     241 cccagcccac aagaagtagc attggaaaat gtgacagaac cttttaatat gtggaagaat 
     301 gacatggtag aacagatgca tgaggatata atcagtttat gggatcaaag cctaaagcca 
     361 tgtgtaaaac taactccact ctgtgttact ttaaattgta ctgattacaa ttataatact 
     421 actaataata gtagtttgga agaaatgaag ggagaagtaa aagaatgctc tttcaatatc 
     481 accacaagcc taagagataa gtggcagaaa gaatatgcac ttttttataa acttgatgta 
     541 gttccaatag ataatggtac cacatatagg ttgataaatt gtaacacctc agtcattaca 
     601 caggcctgtc caaaggtatc ctttgagcca attcccatac attattgtac tccagctggt 
     661 tttgcactct taaagtgtaa tgataagaat ttcaatggaa caggaccatg taaaaatgtc 
     721 agcacagtac aatgtacaca tggaattaag ccagtagtgt caactcaact gttgttaaat 
     781 ggcagtctag cagaagaagg gatagtaatt agatctgaaa atttcacaaa caatgctaaa 
     841 accataatag tccagctaaa agatcctgta gagatcaatt gtacaagacc cggcaacaat 
     901 acaagaaaaa gtatacatcc aggaccaggg ggagcaatct atgcaacagg agcaataata 
     961 ggagacataa ggagagcaca ttgtatcatt agtggcacaa aatggaataa cactttagga 
    1021 cagatagtca aaaaattagg agaacaattt aatacaacaa aaataatttt taatcactcc 
    1081 tcaggagggg acccagaaat tgtaatgcac agttttaatt gtggagggga atttttctac 
    1141 tgtaattcaa caccactgtt taatagtagt tggacatcta atggtacatc taatggtact 
    1201 tggataaatt ataataataa tactaaagaa aatatcacac tcctatgcag aataaaacaa 
    1261 attataaaca tgtggcagga agtaggaaaa gcaatgtatg cccctcctat cagaggagaa 
    1321 attagttgtt tatcaaatat tacagggctg ctattaacaa gagatggtgg gattaacggg 
    1381 agcaacaatg aaaccttcag acctggagga ggaaacatga aagacaattg gagaagtgaa 
    1441 ctatataaat ataaagtagt acaaattgaa ccattaggag tagctcccac acaggcaaaa 
    1501 agaagagtgg tgcaaagaga aaaaagagca gtgggaacat taggagctat gttccttggg 
    1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcaa tggcgctgac ggtacaggcc 
    1621 agacaattat tgtctggtat agtgcagcag cagaacaatc tgctgagagc tattgaggcg 
    1681 caacagcata tgttgcaact cacagtctgg ggcattaagc agctccaggc aagagtcctg 
    1741 gctgtggaaa gatacctaaa ggatcaacag ctcctaggga tttggggttg ctctggaaaa 
    1801 ctcatttgca ccactgctgt accttggaat gttagttgga gtaataatag atctctagat 
    1861 aaaaatgata ataggtctct atattacatt tgggacaaca tgacctggat ggagtgggaa 
    1921 agagaaattg acaattacac aggcataata tataacttaa ttgaacaatc acagaaccaa 
    1981 caggaaaaga atgaacaaga attactggaa ttagataagt gggcaagttt atggacctgg 
    2041 tttgacatat caaattggct gtggtatata agaatattca taatgatagt aggaggcttg 
    2101 ataggtttaa gaatagtttt tgctgtgctt tctatagtaa atagagttag gcagggatac 
    2161 tcaccattat catttcagac cctcctccca gtcccgaggg gacccgacag gcccgaagga 
    2221 atcgaagaag gaggtggaga gcaagacaga ggcagatcca atcgattagt gcatggattc 
    2281 ttagcactca tctgggacga tctacggagc ctgtgtctct tcagctacca ccgcttgaga 
    2341 gacttactct tgattgtagc gaggattgtg gaacttctgg gacgcagggg gtgggaaatc 
    2401 ctcaagtatt ggtggaatct cctacaatat tggaatcagg aactaaagaa tagtgctgtt 
    2461 agcttgctca acgccacagc tatagcagta gctgagggga cagatagggt tatagaagta 
    2521 gcacaaagaa tttttagagc ttttctccac gtacctagaa gaatcagaca gggctttgaa 
    2581 aggtgtttat tataa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.