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LOCUS GU330296 2595 bp DNA linear VRL 24-SEP-2011
DEFINITION HIV-1 isolate 04013171_3_B22 from USA envelope glycoprotein (env)
gene, complete cds; and vpu protein (vpu), rev protein (rev), and
tat protein (tat) genes, partial cds
ACCESSION GU330296
VERSION GU330296.1 GI:347350113
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2595)
Show all sequences for reference 1
AUTHORS Li,H., Bar,K.J., Wang,S., Decker,J.M., Chen,Y., Sun,C.,
Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Morgan,C.J.,
Schumacher,J.E., Hraber,P., Giorgi,E.E., Bhattacharya,T.,
Korber,B.T., Eron,J., Perelson,A.S., Eron,J.J., Cohen,M.S.,
Hicks,C.B., Haynes,B.F., Markowitz,M., Keele,B.F., Hahn,B.H. and
Shaw,G.M.
TITLE High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
JOURNAL PLoS Pathog. 6 (5), E1000890 (2010)
PUBMED 20485520
REFERENCE 2 (bases 1 to 2595)
Show all sequences for reference 2
AUTHORS Learn,G.H.
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2009) Department of Medicine, University of
Alabama at Birmingham, 720 20th Street South, KAUL 852, Birmingham,
AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 04013171 Sequence Name
04013171_3_B22 Subtype B Sample date 2/6/2002 Patient sex M
Infection country USA Fiebig Stage IV DBID 81214996
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2595
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="04013171_3_B22"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="06-Feb-2002"
/note="subtype: B"
gene 1..2595
/gene="env"
CDS 1..2595
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEO80515.1"
/db_xref="GI:347350117"
/translation="MKVKGIRKNYQHLWRWGTMLTMLLGMLMICSVTGQLWVTVYYGV
PVWKEATTTLFCASDAKAYKTEVHNVWATHACVPTDPSPQEVALENVTEPFNMWKNDM
VEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDYNYNTTNNSSLEEMKGEVKECSFNI
TTSLRDKWQKEYALFYKLDVVPIDNGTTYRLINCNTSVITQACPKVSFEPIPIHYCTP
AGFALLKCNDKNFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEGIVIRSENFT
NNAKTIIVQLKDPVEINCTRPGNNTRKSIHPGPGGAIYATGAIIGDIRRAHCIISGTK
WNNTLGQIVKKLGEQFNTTKIIFNHSSGGDPEIVMHSFNCGGEFFYCNSTPLFNSSWT
SNGTSNGTWINYNNNTKENITLLCRIKQIINMWQEVGKAMYAPPIRGEISCLSNITGL
LLTRDGGINGSNNETFRPGGGNMKDNWRSELYKYKVVQIEPLGVAPTQAKRRVVQREK
RAVGTLGAMFLGFLGAAGSTMGAASMALTVQARQLLSGIVQQQNNLLRAIEAQQHMLQ
LTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNVSWSNNRSLDKNDN
RSLYYIWDNMTWMEWEREIDNYTGIIYNLIEQSQNQQEKNEQELLELDKWASLWTWFD
ISNWLWYIRIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTLLPVPRGPDRPEG
IEEGGGEQDRGRSNRLVHGFLALIWDDLRSLCLFSYHRLRDLLLIVARIVELLGRRGW
EILKYWWNLLQYWNQELKNSAVSLLNATAIAVAEGTDRVIEVAQRIFRAFLHVPRRIR
QGFERCLL"
gene <1..92
/gene="vpu"
CDS <1..92
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AEO80514.1"
/db_xref="GI:347350116"
/translation="ESEGDQEELSALVEMGHHAHHAPWDVDDL"
gene <2179..2453
/gene="rev"
CDS <2179..2453
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AEO80513.1"
/db_xref="GI:347350115"
/translation="PPPSPEGTRQARRNRRRRWRARQRQIQSISAWILSTHLGRSTEP
VSLQLPPLERLTLDCSEDCGTSGTQGVGNPQVLVESPTILESGTKE"
gene <2179..2269
/gene="tat"
CDS <2179..2269
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AEO80512.1"
/db_xref="GI:347350114"
/translation="PSSQSRGDPTGPKESKKEVESKTEADPID"
BASE COUNT 903 a 440 c 597 g 655 t
ORIGIN
1 atgaaagtga aggggatcag gaagaattat cagcacttgt ggagatgggg caccatgctc
61 accatgctcc ttgggatgtt gatgatctgt agtgttacag gacaattgtg ggtcacagtc
121 tattatggag tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct
181 aaggcatata agacagaggt acataatgtt tgggccacac atgcctgtgt acccacagac
241 cccagcccac aagaagtagc attggaaaat gtgacagaac cttttaatat gtggaagaat
301 gacatggtag aacagatgca tgaggatata atcagtttat gggatcaaag cctaaagcca
361 tgtgtaaaac taactccact ctgtgttact ttaaattgta ctgattacaa ttataatact
421 actaataata gtagtttgga agaaatgaag ggagaagtaa aagaatgctc tttcaatatc
481 accacaagcc taagagataa gtggcagaaa gaatatgcac ttttttataa acttgatgta
541 gttccaatag ataatggtac cacatatagg ttgataaatt gtaacacctc agtcattaca
601 caggcctgtc caaaggtatc ctttgagcca attcccatac attattgtac tccagctggt
661 tttgcactct taaagtgtaa tgataagaat ttcaatggaa caggaccatg taaaaatgtc
721 agcacagtac aatgtacaca tggaattaag ccagtagtgt caactcaact gttgttaaat
781 ggcagtctag cagaagaagg gatagtaatt agatctgaaa atttcacaaa caatgctaaa
841 accataatag tccagctaaa agatcctgta gagatcaatt gtacaagacc cggcaacaat
901 acaagaaaaa gtatacatcc aggaccaggg ggagcaatct atgcaacagg agcaataata
961 ggagacataa ggagagcaca ttgtatcatt agtggcacaa aatggaataa cactttagga
1021 cagatagtca aaaaattagg agaacaattt aatacaacaa aaataatttt taatcactcc
1081 tcaggagggg acccagaaat tgtaatgcac agttttaatt gtggagggga atttttctac
1141 tgtaattcaa caccactgtt taatagtagt tggacatcta atggtacatc taatggtact
1201 tggataaatt ataataataa tactaaagaa aatatcacac tcctatgcag aataaaacaa
1261 attataaaca tgtggcagga agtaggaaaa gcaatgtatg cccctcctat cagaggagaa
1321 attagttgtt tatcaaatat tacagggctg ctattaacaa gagatggtgg gattaacggg
1381 agcaacaatg aaaccttcag acctggagga ggaaacatga aagacaattg gagaagtgaa
1441 ctatataaat ataaagtagt acaaattgaa ccattaggag tagctcccac acaggcaaaa
1501 agaagagtgg tgcaaagaga aaaaagagca gtgggaacat taggagctat gttccttggg
1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcaa tggcgctgac ggtacaggcc
1621 agacaattat tgtctggtat agtgcagcag cagaacaatc tgctgagagc tattgaggcg
1681 caacagcata tgttgcaact cacagtctgg ggcattaagc agctccaggc aagagtcctg
1741 gctgtggaaa gatacctaaa ggatcaacag ctcctaggga tttggggttg ctctggaaaa
1801 ctcatttgca ccactgctgt accttggaat gttagttgga gtaataatag atctctagat
1861 aaaaatgata ataggtctct atattacatt tgggacaaca tgacctggat ggagtgggaa
1921 agagaaattg acaattacac aggcataata tataacttaa ttgaacaatc acagaaccaa
1981 caggaaaaga atgaacaaga attactggaa ttagataagt gggcaagttt atggacctgg
2041 tttgacatat caaattggct gtggtatata agaatattca taatgatagt aggaggcttg
2101 ataggtttaa gaatagtttt tgctgtgctt tctatagtaa atagagttag gcagggatac
2161 tcaccattat catttcagac cctcctccca gtcccgaggg gacccgacag gcccgaagga
2221 atcgaagaag gaggtggaga gcaagacaga ggcagatcca atcgattagt gcatggattc
2281 ttagcactca tctgggacga tctacggagc ctgtgtctct tcagctacca ccgcttgaga
2341 gacttactct tgattgtagc gaggattgtg gaacttctgg gacgcagggg gtgggaaatc
2401 ctcaagtatt ggtggaatct cctacaatat tggaatcagg aactaaagaa tagtgctgtt
2461 agcttgctca acgccacagc tatagcagta gctgagggga cagatagggt tatagaagta
2521 gcacaaagaa tttttagagc ttttctccac gtacctagaa gaatcagaca gggctttgaa
2581 aggtgtttat tataa
//
last modified: Tue May 31 10:56 2022