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LOCUS GU330266 2622 bp DNA linear VRL 24-SEP-2011
DEFINITION HIV-1 isolate 04013171_3_2C1 from USA envelope glycoprotein (env)
gene, complete cds; and vpu protein (vpu), rev protein (rev), and
tat protein (tat) genes, partial cds
ACCESSION GU330266
VERSION GU330266.1 GI:347349966
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2622)
Show all sequences for reference 1
AUTHORS Li,H., Bar,K.J., Wang,S., Decker,J.M., Chen,Y., Sun,C.,
Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Morgan,C.J.,
Schumacher,J.E., Hraber,P., Giorgi,E.E., Bhattacharya,T.,
Korber,B.T., Eron,J., Perelson,A.S., Eron,J.J., Cohen,M.S.,
Hicks,C.B., Haynes,B.F., Markowitz,M., Keele,B.F., Hahn,B.H. and
Shaw,G.M.
TITLE High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
JOURNAL PLoS Pathog. 6 (5), E1000890 (2010)
PUBMED 20485520
REFERENCE 2 (bases 1 to 2622)
Show all sequences for reference 2
AUTHORS Learn,G.H.
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2009) Department of Medicine, University of
Alabama at Birmingham, 720 20th Street South, KAUL 852, Birmingham,
AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 04013171 Sequence Name
04013171_3_2C1 Subtype B Sample date 2/6/2002 Patient sex M
Infection country USA Fiebig Stage IV DBID 639934877
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2622
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="04013171_3_2C1"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="06-Feb-2002"
/note="subtype: B"
gene 1..2622
/gene="env"
CDS 1..2622
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEO80398.1"
/db_xref="GI:347349970"
/translation="MKVKGIRKNYQHLWRWGTMLTMLLGMLMICSVTGQLWVTVYYGV
PVWKEATTTLFCASDAKAYKTEVHNVWATHACVPTDPNPQEVSLENVTENFNMWKNDM
VEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDYNITKTSNSTNTSSSSLDEMKGEIK
NCSFNITTSLRDKWQKEYALFYKLDVVPIDNGTTYTLINCNTSVITQACPKVSFEPIP
IHYCTPAGFALLKCNDKNFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVI
RSENFTNNAKTIIVQLKDPVEINCTRPGNNTRKSIHPGPGRAIYATEAIIGDIRRAHC
IINGTKWNNTLGQIVKKLGEQFNTAKIIFNHSSGGDPEIVMHSFNCGGEFFYCNSTPL
FNSSWTSNGTSNGTWKPDDAWNNNTKENITLLCRIKQIINMWQEVGKAMYAPPIRGEI
SCLSNITGLLLTRDGGINGSNNETFRPGGGNMKDNWRSELYKYKVVQIEPLGVAPTQA
KRRVVQREKRAVGTLGAMFLGFLGAAGSTMGAASMALTVQARQLLSGIVQQQNNLLRA
IEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNVSWSN
NRSLDKNDNRSLYYIWDNMTWMEWEREIDNYTGIIYNLIEQSQNQQEKNEQELLELDK
WASLWTWFDISNWLWYIRIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTLLPV
PRGPDRPEGIEEGGGEQDRGRSNRLVHGFLALIWDDLRSLCLFSYHRLRDLLLIVARI
VELLGRRGWEILKYWWNLLQYWNQELKNSAVSLLNATAIAVAEGTDRVIEVAQRIFRA
FLHVPRRIRQGFERCLL"
gene <1..92
/gene="vpu"
CDS <1..92
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AEO80397.1"
/db_xref="GI:347349969"
/translation="ESEGDQEELSALVEMGHHAHHAPWDVNDL"
gene <2206..2480
/gene="rev"
CDS <2206..2480
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AEO80396.1"
/db_xref="GI:347349968"
/translation="PPPSPEGTRQARRNRRRRWRARQRQIQSISAWILSTHLGRSTEP
VSLQLPPLERLTLDCSEDCGTSGTQGVGNPQVLVESPTILESGTKE"
gene <2206..2296
/gene="tat"
CDS <2206..2296
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AEO80395.1"
/db_xref="GI:347349967"
/translation="PSSQSRGDPTGPKESKKEVESKTEADPID"
BASE COUNT 914 a 450 c 599 g 659 t
ORIGIN
1 atgaaagtga aggggatcag gaagaattat cagcacttgt ggagatgggg caccatgctc
61 accatgctcc ttgggatgtt aatgatctgt agtgttacag gacaattgtg ggtcacagtc
121 tattatggag tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct
181 aaggcatata agacagaggt acataatgtt tgggccacac atgcctgtgt acccacagac
241 cccaacccac aagaagtatc actggaaaat gtgacagaaa attttaatat gtggaaaaat
301 gacatggtag aacagatgca tgaggatata atcagtttat gggatcaaag cctaaagcca
361 tgtgtaaaac taaccccact ctgtgttact ttaaattgta ctgattacaa tattactaag
421 actagtaata gtactaatac cagtagtagt agtttggatg aaatgaaggg agaaataaaa
481 aactgctctt tcaatatcac cacaagccta agagataagt ggcagaaaga atatgcactg
541 ttttataaac ttgatgtagt tccaatagat aatggtacca catatacctt gataaattgt
601 aacacctcag tcattacaca ggcctgtcca aaggtatcct ttgagccaat tcccatacat
661 tattgtactc cagctggttt tgcactctta aagtgtaatg ataagaattt caatggaaca
721 ggaccatgta aaaatgtcag cacagtacaa tgtacacatg gaattaagcc agtagtgtca
781 actcaactgt tgttaaatgg cagtctagca gaagaagaga tagtaattag atctgaaaat
841 ttcacaaaca atgctaaaac cataatagtc cagctaaaag atcctgtaga gatcaattgt
901 acaagacccg gcaacaatac aagaaaaagt atacatccag gaccagggag agcaatctat
961 gcaacagaag caataatagg agacataagg cgagcacatt gtatcattaa tggcacaaaa
1021 tggaataaca ctttaggaca gatagtcaaa aaattaggag agcaatttaa tacagcaaaa
1081 ataattttta atcactcctc aggaggggac ccagaaattg taatgcacag ttttaattgt
1141 ggaggggaat ttttctactg taattcaaca ccactgttta atagtagttg gacatctaat
1201 ggtacatcta atggtacttg gaagcctgat gatgcttgga ataataatac taaagaaaat
1261 atcacactcc tatgcagaat aaaacaaatt ataaacatgt ggcaggaagt aggaaaagca
1321 atgtatgccc ctcctatcag aggagaaatt agttgtttat caaatattac agggctgcta
1381 ttaacaagag atggtgggat taacgggagc aacaatgaaa ccttcagacc tggaggagga
1441 aacatgaaag acaattggag aagtgaacta tataaatata aagtagtaca aattgaacca
1501 ttaggagtag ctcccacaca ggcaaaaaga agagtggtgc aaagagaaaa aagagcagtg
1561 ggaacattag gagctatgtt ccttgggttc ttgggagcag caggaagcac tatgggcgca
1621 gcgtcaatgg cgctgacggt acaggccaga caattattgt ctggtatagt gcagcagcag
1681 aacaatctgc tgagagctat tgaggcgcaa cagcatatgt tgcaactcac agtctggggc
1741 attaagcagc tccaggcaag agtcctggct gtggaaagat acctaaagga tcaacagctc
1801 ctagggattt ggggttgctc tggaaaactc atttgcacca ctgctgtacc ttggaatgtt
1861 agttggagta ataatagatc tctagataaa aatgataata ggtctctata ttacatttgg
1921 gacaacatga cctggatgga gtgggaaaga gaaattgaca attacacagg cataatatat
1981 aacttaattg aacaatcaca gaaccaacag gaaaagaatg aacaagaatt actggaatta
2041 gataagtggg caagtttatg gacctggttt gacatatcaa attggctgtg gtatataaga
2101 atattcataa tgatagtagg aggcttgata ggtttaagaa tagtttttgc tgtgctttct
2161 atagtaaata gagttaggca gggatactca ccattatcat ttcagaccct cctcccagtc
2221 ccgaggggac ccgacaggcc cgaaggaatc gaagaaggag gtggagagca agacagaggc
2281 agatccaatc gattagtgca tggattctta gcactcatct gggacgatct acggagcctg
2341 tgtctcttca gctaccaccg cttgagagac ttactcttga ttgtagcgag gattgtggaa
2401 cttctgggac gcagggggtg ggaaatcctc aagtattggt ggaatctcct acaatattgg
2461 aatcaggaac taaagaatag tgctgttagc ttgctcaacg ccacagctat agcagtagct
2521 gaggggacag atagggttat agaagtagca caaagaattt ttagagcttt tctccacgta
2581 cctagaagaa tcagacaggg ctttgaaagg tgtttattat aa
//
last modified: Tue May 31 10:56 2022