HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GU330254		    2593 bp    DNA     linear	VRL 24-SEP-2011
DEFINITION  HIV-1 isolate 04013171_3_2A31 from USA nonfunctional envelope
	    glycoprotein (env) gene, complete sequence; and vpu protein (vpu),
	    rev protein (rev), and tat protein (tat) genes, partial cds
ACCESSION   GU330254
VERSION     GU330254.1 GI:347349907
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2593)
            Show all sequences for reference 1
  AUTHORS   Li,H., Bar,K.J., Wang,S., Decker,J.M., Chen,Y., Sun,C.,
	    Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Morgan,C.J.,
	    Schumacher,J.E., Hraber,P., Giorgi,E.E., Bhattacharya,T.,
	    Korber,B.T., Eron,J., Perelson,A.S., Eron,J.J., Cohen,M.S.,
	    Hicks,C.B., Haynes,B.F., Markowitz,M., Keele,B.F., Hahn,B.H. and
	    Shaw,G.M.
  TITLE     High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
  JOURNAL   PLoS Pathog. 6 (5), E1000890 (2010)
  PUBMED    20485520
REFERENCE   2 (bases 1 to 2593)
            Show all sequences for reference 2
  AUTHORS   Learn,G.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2009) Department of Medicine, University of
	    Alabama at Birmingham, 720 20th Street South, KAUL 852, Birmingham,
	    AL 35294, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 04013171 Sequence Name
	    04013171_3_2A31 Subtype B Sample date 2/6/2002 Patient sex M
	    Infection country USA Fiebig Stage IV DBID 3054492945
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2593
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="04013171_3_2A31"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="06-Feb-2002"
		     /note="subtype: B"
     gene	     1..2593
		     /gene="env"
     misc_feature    1..2593
		     /gene="env"
		     /note="nonfunctional envelope glycoprotein due to
		     mutation; envelope glycoprotein"
     gene	     <1..92
		     /gene="vpu"
     CDS	     <1..92
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AEO80350.1"
		     /db_xref="GI:347349910"
		     /translation="ESEGDQEELSALVEMGHHAHHAPWDVDDL"
     gene	     <2177..2451
		     /gene="rev"
     CDS	     <2177..2451
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEO80349.1"
		     /db_xref="GI:347349909"
		     /translation="PPPSPEGTRQARRNRRRRWRARQRQIQSISAWILSTHLGRSTEP
		     VSLQLPPLERLTLDCSEDCGTSGTQGVGNPQVLVESPTILESGTKE"
     gene	     <2177..2267
		     /gene="tat"
     CDS	     <2177..2267
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AEO80348.1"
		     /db_xref="GI:347349908"
		     /translation="PSSQSRGDPTGPKESKKEVESKTEADPID"
BASE COUNT	902 a	 439 c	  597 g    655 t
ORIGIN
       1 atgaaagtga aggggatcag gaagaattat cagcacttgt ggagatgggg caccatgctc 
      61 accatgctcc ttgggatgtt gatgatctgt agtgttacag gacaattgtg ggtcacagtc 
     121 tattatggag tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct 
     181 aaggcatata agacagaggt acataatgtt tgggccacat gcctgtgtac ccacagaccc 
     241 cagcccacaa gaagtagcat tggaaaatgt gacagaacct tttaatatgt ggaagaatga 
     301 catggtagaa cagatgcatg aggatataat cagtttatgg gatcaaagcc taaagccatg 
     361 tgtaaaacta actccactct gtgttacttt aaattgtact gattacaatt ataatactac 
     421 taataatagt agtttggaag aaatgaaggg agaagtaaaa gaatgctctt tcaatatcac 
     481 cacaagccta agagataagt ggcagaaaga atatgcactt ttttataaac ttgatgtagt 
     541 tccaatagat aatggtacca catataggtt gataaattgt aacacctcag tcattacaca 
     601 ggcctgtcca aaggtatcct ttgagccaat tcccatacat tattgtactc cagctggttt 
     661 tgcactctta aagtgtaatg ataagaattt caatggaaca ggaccatgta aaaatgtcag 
     721 cacagtacaa tgtacacatg gaattaagcc agtagtgtca actcaactgt tgttaaatgg 
     781 cagtctagca gaagaaggga tagtaattag atctgaaaat ttcacaaaca atgctaaaac 
     841 cataatagtc cagctaaaag atcctgtaga gatcaattgt acaagacccg gcaacaatac 
     901 aagaaaaagt atacatccag gaccaggggg agcaatctat gcaacaggag caataatagg 
     961 agacataagg agagcacatt gtatcattag tggcacaaaa tggaataaca ctttaggaca 
    1021 gatagtcaaa aaattaggag aacaatttaa tacaacaaaa ataattttta atcactcctc 
    1081 aggaggggac ccagaaattg taatgcacag ttttaattgt ggaggggaat ttttctactg 
    1141 taattcaaca ccactgttta atagtagttg gacatctaat ggtacatcta atggtacttg 
    1201 gataaattat aataataata ctaaagaaaa tatcacactc ctatgcagaa taaaacaaat 
    1261 tataaacatg tggcaggaag taggaaaagc aatgtatgcc cctcctatca gaggagaaat 
    1321 tagttgttta tcaaatatta cagggctgct attaacaaga gatggtggga ttaacgggag 
    1381 caacaatgaa accttcagac ctggaggagg aaacatgaaa gacaattgga gaagtgaact 
    1441 atataaatat aaagtagtac aaattgaacc attaggagta gctcccacac aggcaaaaag 
    1501 aagagtggtg caaagagaaa aaagagcagt gggaacatta ggagctatgt tccttgggtt 
    1561 cttgggagca gcaggaagca ctatgggcgc agcgtcaatg gcgctgacgg tacaggccag 
    1621 acaattattg tctggtatag tgcagcagca gaacaatctg ctgagagcta ttgaggcgca 
    1681 acagcatatg ttgcaactca cagtctgggg cattaagcag ctccaggcaa gagtcctggc 
    1741 tgtggaaaga tacctaaagg atcaacagct cctagggatt tggggttgct ctggaaaact 
    1801 catttgcacc actgctgtac cttggaatgt tagttggagt aataatagat ctctagataa 
    1861 aaatgataat aggtctctat attacatttg ggacaacatg acctggatgg agtgggaaag 
    1921 agaaattgac aattacacag gcataatata taacttaatt gaacaatcac agaaccaaca 
    1981 ggaaaagaat gaacaagaat tactggaatt agataagtgg gcaagtttat ggacctggtt 
    2041 tgacatatca aattggctgt ggtatataag aatattcata atgatagtag gaggcttgat 
    2101 aggtttaaga atagtttttg ctgtgctttc tatagtaaat agagttaggc agggatactc 
    2161 accattatca tttcagaccc tcctcccagt cccgagggga cccgacaggc ccgaaggaat 
    2221 cgaagaagga ggtggagagc aagacagagg cagatccaat cgattagtgc atggattctt 
    2281 agcactcatc tgggacgatc tacggagcct gtgtctcttc agctaccacc gcttgagaga 
    2341 cttactcttg attgtagcga ggattgtgga acttctggga cgcagggggt gggaaatcct 
    2401 caagtattgg tggaatctcc tacaatattg gaatcaggaa ctaaagaata gtgctgttag 
    2461 cttgctcaac gccacagcta tagcagtagc tgaggggaca gatagggtta tagaagtagc 
    2521 acaaagaatt tttagagctt ttctccacgt acctagaaga atcagacagg gctttgaaag 
    2581 gtgtttatta taa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.