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LOCUS GU330254 2593 bp DNA linear VRL 24-SEP-2011
DEFINITION HIV-1 isolate 04013171_3_2A31 from USA nonfunctional envelope
glycoprotein (env) gene, complete sequence; and vpu protein (vpu),
rev protein (rev), and tat protein (tat) genes, partial cds
ACCESSION GU330254
VERSION GU330254.1 GI:347349907
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2593)
Show all sequences for reference 1
AUTHORS Li,H., Bar,K.J., Wang,S., Decker,J.M., Chen,Y., Sun,C.,
Salazar-Gonzalez,J.F., Salazar,M.G., Learn,G.H., Morgan,C.J.,
Schumacher,J.E., Hraber,P., Giorgi,E.E., Bhattacharya,T.,
Korber,B.T., Eron,J., Perelson,A.S., Eron,J.J., Cohen,M.S.,
Hicks,C.B., Haynes,B.F., Markowitz,M., Keele,B.F., Hahn,B.H. and
Shaw,G.M.
TITLE High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
JOURNAL PLoS Pathog. 6 (5), E1000890 (2010)
PUBMED 20485520
REFERENCE 2 (bases 1 to 2593)
Show all sequences for reference 2
AUTHORS Learn,G.H.
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2009) Department of Medicine, University of
Alabama at Birmingham, 720 20th Street South, KAUL 852, Birmingham,
AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 04013171 Sequence Name
04013171_3_2A31 Subtype B Sample date 2/6/2002 Patient sex M
Infection country USA Fiebig Stage IV DBID 3054492945
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2593
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="04013171_3_2A31"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="06-Feb-2002"
/note="subtype: B"
gene 1..2593
/gene="env"
misc_feature 1..2593
/gene="env"
/note="nonfunctional envelope glycoprotein due to
mutation; envelope glycoprotein"
gene <1..92
/gene="vpu"
CDS <1..92
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AEO80350.1"
/db_xref="GI:347349910"
/translation="ESEGDQEELSALVEMGHHAHHAPWDVDDL"
gene <2177..2451
/gene="rev"
CDS <2177..2451
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AEO80349.1"
/db_xref="GI:347349909"
/translation="PPPSPEGTRQARRNRRRRWRARQRQIQSISAWILSTHLGRSTEP
VSLQLPPLERLTLDCSEDCGTSGTQGVGNPQVLVESPTILESGTKE"
gene <2177..2267
/gene="tat"
CDS <2177..2267
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AEO80348.1"
/db_xref="GI:347349908"
/translation="PSSQSRGDPTGPKESKKEVESKTEADPID"
BASE COUNT 902 a 439 c 597 g 655 t
ORIGIN
1 atgaaagtga aggggatcag gaagaattat cagcacttgt ggagatgggg caccatgctc
61 accatgctcc ttgggatgtt gatgatctgt agtgttacag gacaattgtg ggtcacagtc
121 tattatggag tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct
181 aaggcatata agacagaggt acataatgtt tgggccacat gcctgtgtac ccacagaccc
241 cagcccacaa gaagtagcat tggaaaatgt gacagaacct tttaatatgt ggaagaatga
301 catggtagaa cagatgcatg aggatataat cagtttatgg gatcaaagcc taaagccatg
361 tgtaaaacta actccactct gtgttacttt aaattgtact gattacaatt ataatactac
421 taataatagt agtttggaag aaatgaaggg agaagtaaaa gaatgctctt tcaatatcac
481 cacaagccta agagataagt ggcagaaaga atatgcactt ttttataaac ttgatgtagt
541 tccaatagat aatggtacca catataggtt gataaattgt aacacctcag tcattacaca
601 ggcctgtcca aaggtatcct ttgagccaat tcccatacat tattgtactc cagctggttt
661 tgcactctta aagtgtaatg ataagaattt caatggaaca ggaccatgta aaaatgtcag
721 cacagtacaa tgtacacatg gaattaagcc agtagtgtca actcaactgt tgttaaatgg
781 cagtctagca gaagaaggga tagtaattag atctgaaaat ttcacaaaca atgctaaaac
841 cataatagtc cagctaaaag atcctgtaga gatcaattgt acaagacccg gcaacaatac
901 aagaaaaagt atacatccag gaccaggggg agcaatctat gcaacaggag caataatagg
961 agacataagg agagcacatt gtatcattag tggcacaaaa tggaataaca ctttaggaca
1021 gatagtcaaa aaattaggag aacaatttaa tacaacaaaa ataattttta atcactcctc
1081 aggaggggac ccagaaattg taatgcacag ttttaattgt ggaggggaat ttttctactg
1141 taattcaaca ccactgttta atagtagttg gacatctaat ggtacatcta atggtacttg
1201 gataaattat aataataata ctaaagaaaa tatcacactc ctatgcagaa taaaacaaat
1261 tataaacatg tggcaggaag taggaaaagc aatgtatgcc cctcctatca gaggagaaat
1321 tagttgttta tcaaatatta cagggctgct attaacaaga gatggtggga ttaacgggag
1381 caacaatgaa accttcagac ctggaggagg aaacatgaaa gacaattgga gaagtgaact
1441 atataaatat aaagtagtac aaattgaacc attaggagta gctcccacac aggcaaaaag
1501 aagagtggtg caaagagaaa aaagagcagt gggaacatta ggagctatgt tccttgggtt
1561 cttgggagca gcaggaagca ctatgggcgc agcgtcaatg gcgctgacgg tacaggccag
1621 acaattattg tctggtatag tgcagcagca gaacaatctg ctgagagcta ttgaggcgca
1681 acagcatatg ttgcaactca cagtctgggg cattaagcag ctccaggcaa gagtcctggc
1741 tgtggaaaga tacctaaagg atcaacagct cctagggatt tggggttgct ctggaaaact
1801 catttgcacc actgctgtac cttggaatgt tagttggagt aataatagat ctctagataa
1861 aaatgataat aggtctctat attacatttg ggacaacatg acctggatgg agtgggaaag
1921 agaaattgac aattacacag gcataatata taacttaatt gaacaatcac agaaccaaca
1981 ggaaaagaat gaacaagaat tactggaatt agataagtgg gcaagtttat ggacctggtt
2041 tgacatatca aattggctgt ggtatataag aatattcata atgatagtag gaggcttgat
2101 aggtttaaga atagtttttg ctgtgctttc tatagtaaat agagttaggc agggatactc
2161 accattatca tttcagaccc tcctcccagt cccgagggga cccgacaggc ccgaaggaat
2221 cgaagaagga ggtggagagc aagacagagg cagatccaat cgattagtgc atggattctt
2281 agcactcatc tgggacgatc tacggagcct gtgtctcttc agctaccacc gcttgagaga
2341 cttactcttg attgtagcga ggattgtgga acttctggga cgcagggggt gggaaatcct
2401 caagtattgg tggaatctcc tacaatattg gaatcaggaa ctaaagaata gtgctgttag
2461 cttgctcaac gccacagcta tagcagtagc tgaggggaca gatagggtta tagaagtagc
2521 acaaagaatt tttagagctt ttctccacgt acctagaaga atcagacagg gctttgaaag
2581 gtgtttatta taa
//
last modified: Tue May 31 10:56 2022