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LOCUS	    GU191622		    1575 bp    RNA     linear	VRL 13-DEC-2009
DEFINITION  Human immunodeficiency virus isolate CDF0011 pol protein (pol)
	    gene, partial cds
ACCESSION   GU191622
VERSION     GU191622.1 GI:270312816
KEYWORDS    .
SOURCE	    Human immunodeficiency virus
  ORGANISM  Human immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 1575)
            Show all sequences for reference 1
  AUTHORS   Aghokeng,A.F., Vergne,L., Mpoudi-Ngole,E., Mbangue,M., Deoudje,N.,
	    Mokondji,E., Nambei,W.S., Peyou-Ndi,M.M., Moka,J.J., Delaporte,E.
	    and Peeters,M.
  TITLE     Evaluation of transmitted HIV drug resistance among
	    recently-infected antenatal clinic attendees in four Central
	    African countries
  JOURNAL   Antivir. Ther. (Lond.) 14 (3), 401-411 (2009)
  PUBMED    19474474
REFERENCE   2 (bases 1 to 1575)
            Show all sequences for reference 2
  AUTHORS   Aghokeng,A.F., Vergne,L., Mpoudi-Ngole,E., Mbangue,M., Deoudje,N.,
	    Mokondji,E., Nambei,W.S., Peyou-Ndi,M.M., Moka,J.-J.L.,
	    Delaporte,E. and Peeters,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2009) Virology Laboratory IMPM-IRD, Rue Elig
	    Essono Mballa, Yaounde, Centre 1857, Cameroon
FEATURES             Location/Qualifiers
     source	     1..1575
		     /organism="Human immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="CDF0011"
		     /host="Homo sapiens"
		     /db_xref="taxon:12721"
		     /country="Cameroon"
		     /collection_date="2007"
     gene	     <1..>1575
		     /gene="pol"
     CDS	     <1..>1575
		     /gene="pol"
		     /note="contains protease and 5'' end of reverse
		     transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACZ73501.1"
		     /db_xref="GI:270312817"
		     /translation="PQITLWQRPLVIVRIEGQLIEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVRQYDQIHIEIXGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICSEMEKEGKISRIGPENPYNTPVF
		     AIKKKDGTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPYRTNNPE
		     MVIYQYMDDLYVGSDLEIGQHRAKIEELRKHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQHIQLPEKDSWTVNDIQKLVGKLNWASQIFAGIKVKQLCKLLRGAKALTDIV
		     TLTEEAELELAENREILKEPVHGVYYDPTKDLVAEIQKQGQDQWTYQVYQEPYKNLKT
		     GKYAKRRSAHTNDVKQLTEVVQKVATESIIIWGKTPKFRLPIQKETWEAWWMEYWQAT
		     WIPEWEFVNTPPLVKLW"
BASE COUNT	626 a	 254 c	  336 g    354 t      5 other
ORIGIN
       1 cctcaaatca ctctttggca gcgaccctta gtcatagtaa gaatagaggg acaactaata 
      61 gaagccctat tagacacagg agcagatgat acagtattag aagacataaa tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta ttaaagtaag acagtatgat 
     181 cagatacata tagaaatttg kgggaaaaaa gccataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattgggcg aaatatgttg actcagattg ggtgtacttt aaattttcca 
     301 attagtccta ttgaaactgt gccagtaaaa ttgaagccag gaatggatgg cccaaaagtc 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagagatatg ttcagagatg 
     421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccagtwttt 
     481 gccataaara aaaaagatgg tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaggtccaa ctaggaatac ctcatcccgc aggattaaaa 
     601 aaraaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccctagat 
     661 aaggacttta gaaagtacac tgcattcact atacctagtg taaataatga gacaccaggg 
     721 attagatatc agtacaatgt gctgccacag ggatggaaag gatcmccagc aatatttcag 
     781 gcaagcatga caaaaatctt agagccctat agaacaaaca atccagagat ggtgatctac 
     841 caatatatgg atgatttata tgtaggatca gacttagaaa taggacagca tagagcaaaa 
     901 atagaggagt taagaaaaca tctactgaag tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagcatatac agctgccaga aaaagacagc tggactgtca atgatataca gaaattagta 
    1081 ggaaaactaa attgggcaag tcagattttt gcaggaatta aagtaaagca actgtgtaaa 
    1141 ctcctcaggg gggccaaagc actaacagat atagtaacac tgactgagga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gaacctgtac atggagtata ttatgatcca 
    1261 acaaaagact tagtagcaga aatacagaaa caaggacaag accaatggac ttatcaagtt 
    1321 tatcaagagc catataaaaa tctgaaaaca ggaaaatatg caaaaaggag gtctgcccac 
    1381 actaatgatg taaaacaatt gacagaggta gtgcaaaagg tggctacaga aagcataata 
    1441 atatggggaa agactcctaa atttaggtta cccatacaaa aagaaacatg ggaagcatgg 
    1501 tggatggagt attggcaggc tacctggatt cctgaatggg aatttgtcaa tacccctcct 
    1561 ctagtaaaat tatgg
//
last modified: Tue May 31 10:56 2022


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