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LOCUS	    GU191566		    1575 bp    RNA     linear	VRL 13-DEC-2009
DEFINITION  Human immunodeficiency virus isolate CYR018 pol protein (pol) gene,
	    partial cds
ACCESSION   GU191566
VERSION     GU191566.1 GI:270312704
KEYWORDS    .
SOURCE	    Human immunodeficiency virus
  ORGANISM  Human immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 1575)
            Show all sequences for reference 1
  AUTHORS   Aghokeng,A.F., Vergne,L., Mpoudi-Ngole,E., Mbangue,M., Deoudje,N.,
	    Mokondji,E., Nambei,W.S., Peyou-Ndi,M.M., Moka,J.J., Delaporte,E.
	    and Peeters,M.
  TITLE     Evaluation of transmitted HIV drug resistance among
	    recently-infected antenatal clinic attendees in four Central
	    African countries
  JOURNAL   Antivir. Ther. (Lond.) 14 (3), 401-411 (2009)
  PUBMED    19474474
REFERENCE   2 (bases 1 to 1575)
            Show all sequences for reference 2
  AUTHORS   Aghokeng,A.F., Vergne,L., Mpoudi-Ngole,E., Mbangue,M., Deoudje,N.,
	    Mokondji,E., Nambei,W.S., Peyou-Ndi,M.M., Moka,J.-J.L.,
	    Delaporte,E. and Peeters,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2009) Virology Laboratory IMPM-IRD, Rue Elig
	    Essono Mballa, Yaounde, Centre 1857, Cameroon
FEATURES             Location/Qualifiers
     source	     1..1575
		     /organism="Human immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="CYR018"
		     /host="Homo sapiens"
		     /db_xref="taxon:12721"
		     /country="Cameroon"
		     /collection_date="2006"
     gene	     <1..>1575
		     /gene="pol"
     CDS	     <1..>1575
		     /gene="pol"
		     /note="contains protease and 5'' end of reverse
		     transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACZ73445.1"
		     /db_xref="GI:270312705"
		     /translation="PQITLWQRPJVKVRIEGQLIEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICMEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPE
		     IVIYQYMDDLYVGSDLNIEQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQXIQLPEKDHWTVNDIQKLVGKLNWASQIYAGIKVKQLCRLLRGAKALTDIV
		     TLTKEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQDQWTYQIYQEPFKNLKT
		     GKYAKRXSAHTNDVKQLTEVVQKVSQESIVIWGKTPKFRLPIQKETWEAWWLEYWQAT
		     WIPEWEFVNTPPLVKLW"
BASE COUNT	624 a	 249 c	  330 g    362 t     10 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccwta gtaaaagtaa gaatagaggg acagctaata 
      61 gaagctctat tagacacagg agcagatgat acagtattag aggacataaa tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt gggggtttta tcaaagtaag acaatatgat 
     181 cagatactta tagaaatttg tgggaaaaag gctataggta cagtgttagt aggacctaca 
     241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccaa ttgaaactgt accagtaaaa ttaaagccag gaatggatgg tccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaggcattaa cagaaatttg tatggagatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catataatac tccagtattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat 
     541 aaaagaactc aagatttctg ggaggtccaa ctaggaatac ctcaccccgc gggattaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat 
     661 gaaaacttta gaaagtatac tgcattcact atacctagta taaacaatga gacaccgggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag 
     781 gctagcatga caaaaatctt agagcccttt agaacaaaaa atccagagat tgtgatttac 
     841 caatatatgg atgatttata tgtaggatct gacttaaata tagagcagca tagagcaaaa 
     901 atagaggagt taagagaaca tctactgaga tggggattta ccacaccaga caaaaaacat 
     961 cagaaggaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagmccatac agctaccaga aaaggaccay tggactgtca atgatataca gaaattagtg 
    1081 ggaaaattaa actgggcaag tcagatttat gcaggaatta aagtaaaaca aytrtgtaga 
    1141 cttctcaggg gagccaaagc actgacagat atagtaacac tgactaagga agcagaatta 
    1201 gaattggcag araacaggga aattctaaaa gaacctgtac atggagtcta ttatgaccca 
    1261 gcaaaagayc tagtagcaga aatacagaaa caagggcaag accaatggac atatcaaatt 
    1321 tatcaagagc catttaaaaa tctaaaaaca ggaaaatatg caaaaaggar gtctgcccac 
    1381 actaatgatg taaaacaatt aacagaggta gtrcaaaagg tgtctcaaga aagcatagta 
    1441 atatggggaa agacccctaa gtttagacta cccatacaaa aagaaacatg ggaagcatgg 
    1501 tggytggagt attggcaggc tacctggatt cctgaatggg agtttgtcaa tacccctcct 
    1561 ctagtaaaat tatgg
//
last modified: Tue May 31 10:56 2022


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