HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GU191446		    2589 bp    RNA     linear	VRL 09-FEB-2010
DEFINITION  HIV-1 isolate 091-WK48 clone 21 from Canada envelope glycoprotein
	    (env) gene, complete cds
ACCESSION   GU191446
VERSION     GU191446.1 GI:288189462
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2589)
            Show all sequences for reference 1
  AUTHORS   McNicholas,P., Wei,Y., Whitcomb,J., Greaves,W., Black,T.A.,
	    Tremblay,C.L. and Strizki,J.M.
  TITLE     Characterization of emergent HIV resistance in treatment-naive
	    subjects enrolled in a vicriviroc phase 2 trial.
  JOURNAL   J. Infect. Dis.. 201(10); 1470-80 (2010)
  PUBMED    20373959
REFERENCE   2 (bases 1 to 2589)
            Show all sequences for reference 2
  AUTHORS   McNicholas,P., Wei,Y., Whitcomb,J., Greaves,W., Black,T.A.,
	    Tremblay,C.L. and Strizki,J.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2009) Biological Research-Virology, Schering
	    Plough Research Institute, 2015 Galloping Hill Road, K15/
	    E405/4945, Kenilworth, NJ 07033, USA
COMMENT     Sampling date corrected by authors; it is Jan 11, 2005, not Nov
	    1,2005 [JM 8/2010].
FEATURES             Location/Qualifiers
     source	     1..2589
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="091-WK48"
		     /isolation_source="plasma sample of subject enrolled in a
		     clinical trial"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="21"
		     /country="Canada"
		     /collection_date="03-Nov-2005"
     gene	     1..2589
		     /gene="env"
     CDS	     1..2589
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADC43127.1"
		     /db_xref="GI:288189463"
		     /translation="MKVKGIKRNYPHLWIWGTMLLGMLLMSYSAANNLWVTVYYGVPV
		     WKEANATLFCASDAKAYETEAHNIWATHACVPTDPNPQEIELKNVTEDFNMWKNNMVE
		     QMHEDIISLWDQSLKPCVKLTPLCVTLNCTNAISENNCANTTSGDNNATLNNNCSIPE
		     MKNCSFNVTTVLRDKQKQEYALFYKLDIVGIGLDNTSYRLINCNTSAMTQACPKISFE
		     PIPIHYCAPAGFAILKCNDKKFNGTGPCQNVSTVQCTHGIRPVVSTQLLLNGSLAEEE
		     IIIRSENLTNNAKNIIVQFNESVEISCIRPNNNTIKSVHLGPWQAFYATNGIIGDIRK
		     AHCNITRTAWNNTLQKVAQTLGELYNETSIIFKPSSGGDSEITTHSFNCGGEFFYCNT
		     SGLFDGTWNSSTRTWTWLNSNETNTIVTIPCRIKQIINMWQGVGKAMYAPPIKGVIKC
		     TSNITGIILTRDGGKNATNETFRPGGGNMKDNWRSELYKYKVVRIEPLGVAPTRAKRR
		     VVEREKRAIGLGAVFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQ
		     QHLLQLTVWGIKQLQARILAVERYLKDQQFLGVWGCSGKHICTTNVPWNSSWSNNKSL
		     DYIWQNMTWRQWEKEIEQYTGVIYTLIEESQIQQENNEKELLELDKWANLWNWFDITQ
		     WLWYIKIFIIIVGGLIGLRIVFAILSIVRRVRQGYSPLSFQTLFPIPRGRPDGPEGIE
		     EEGGEQGRGNSIRLVNGFLALFWDDLRNLCLFSYHRLRDLVLITARIVDLLGRGGWEA
		     LKYLWNLLGYWSQELKNSAISLYNTTAIAVAEGTDRIIEIVQRACRAILNIPRRIRQG
		     LERALL"
BASE COUNT	918 a	 446 c	  596 g    629 t
ORIGIN
       1 atgaaagtga aggggataaa gaggaattat ccacacttgt ggatatgggg cacgatgctc 
      61 cttgggatgt tgctgatgag ctatagtgca gcaaataatt tgtgggttac agtatattat 
     121 ggggtgcctg tatggaaaga agcaaatgcc actctatttt gtgcatcaga tgctaaagca 
     181 tacgaaacag aggcacataa tatctgggct acacatgcct gtgtacccac ggaccccaat 
     241 ccacaggaaa tagaactaaa aaatgtcaca gaagacttta acatgtggaa aaataacatg 
     301 gtggagcaga tgcatgagga tataatcagt ctatgggacc agagcctaaa accatgtgta 
     361 aaattaaccc cactatgtgt cactttaaat tgcactaatg ctatctcgga aaacaactgc 
     421 gctaatacta catcgggaga caacaatgct acattaaata acaactgcag catcccagaa 
     481 atgaaaaact gctctttcaa tgtaaccaca gtattaaggg ataagcaaaa gcaagaatat 
     541 gcactttttt ataaacttga tatagtagga ataggtcttg ataatacttc ttataggtta 
     601 ataaattgta atacctcagc catgacacag gcttgtccaa agatatcctt tgagccaatt 
     661 cccatacatt attgtgcccc agctggattt gcaattctaa aatgtaatga taagaagttc 
     721 aatggaacag gcccatgcca aaatgttagc acagtacaat gtacacatgg aatcaggcca 
     781 gtagtgtcaa ctcaattgct gttaaatggc agtctagcag aagaagagat cataattaga 
     841 tctgagaatc tcacaaacaa tgctaaaaac ataatagtgc aatttaatga atctgtagaa 
     901 attagttgta taaggcctaa caacaataca ataaaaagtg tacacttagg accatggcag 
     961 gcattctatg caacaaacgg aataatagga gacataagga aagcacattg taatattact 
    1021 aggacagcct ggaataacac gctacaaaag gtagcccaaa cattaggaga actctataac 
    1081 gaaacaagca taatttttaa accatcctca ggaggagact cagaaattac aacacacagt 
    1141 tttaattgtg gaggggaatt tttctattgc aatacatcag gactgtttga tggaacatgg 
    1201 aatagtagta caaggacatg gacatggctt aacagtaatg aaactaatac aattgtaacc 
    1261 atcccatgta gaataaaaca aattataaac atgtggcagg gagtaggaaa agcaatgtat 
    1321 gcccctccca tcaaaggagt aattaagtgt acatcaaata ttacagggat aatattgaca 
    1381 agagatggtg gtaagaatgc tactaatgag accttcaggc ctgggggagg aaatatgaag 
    1441 gacaattgga gaagtgaatt atataaatat aaagtagtaa gaattgaacc attaggagta 
    1501 gcacctacca gggcaaagag aagagtggtg gagagagaaa aaagagcaat aggactggga 
    1561 gctgtgttcc ttggtttctt gggagcagca ggaagcacga tgggcgcagc gtcattgacg 
    1621 ctgacggtac aggccagaca attattgtct ggtatagtgc aacagcaaaa taatttgctg 
    1681 agggctatag aggcgcaaca acatctgttg caactcacgg tctggggcat taaacagctc 
    1741 caggcaagaa tcctggctgt ggaaagatac ctaaaggatc aacagttcct aggagtttgg 
    1801 ggttgctctg gaaaacacat ttgcaccact aatgtaccct ggaactctag ttggagtaat 
    1861 aataaatctc tagactatat ttggcagaac atgacatgga ggcaatggga gaaagaaatt 
    1921 gaacaataca caggtgtaat atacacctta attgaagaat cacaaatcca gcaagaaaac 
    1981 aatgaaaaag aattattaga attggacaaa tgggcaaatt tgtggaattg gtttgacata 
    2041 actcaatggc tgtggtatat aaaaatattc attataatag tagggggctt aatagggttg 
    2101 agaatagttt ttgctatact ttctatagtg agaagagtta ggcagggata ctcacctctg 
    2161 tcgtttcaga cccttttccc aatcccgagg ggacgacccg acgggcccga aggaatagaa 
    2221 gaagaaggtg gagagcaagg cagaggcaac tcaattcgat tggtgaacgg attcttagca 
    2281 ctcttctggg acgatctgag gaacctgtgc ctcttcagct accaccgctt gagagactta 
    2341 gtcttgatca cagcgaggat tgtggacctt ctgggacgcg gggggtggga agcactcaaa 
    2401 tatctgtgga atctcctagg gtattggagt caggaactga agaatagtgc tattagtttg 
    2461 tataacacca cagcaatagc agtagctgag gggacagata ggatcataga aatagtacag 
    2521 agagcttgta gggctattct taacataccc agaagaataa gacaaggttt agaaagagct 
    2581 ttgctataa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.