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LOCUS GU121725 864 bp DNA linear VRL 11-NOV-2009
DEFINITION HIV-1 isolate Virus49 from USA integrase (pol) gene, partial cds
ACCESSION GU121725
VERSION GU121725.1 GI:263201509
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 864)
Show all sequences for reference 1
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Evolution of integrase resistance during failure of integrase
inhibitor-based antiretroviral therapy.
JOURNAL J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
PUBMED 20300008
REFERENCE 2 (bases 1 to 864)
Show all sequences for reference 2
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES Location/Qualifiers
source 1..864
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="Virus49"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="04-Oct-2007"
gene <1..>864
/gene="pol"
CDS <1..>864
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ACY70289.1"
/db_xref="GI:263201510"
/translation="FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQ
LKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAZTGQEXAYFIL
KLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPRNPQSQGVVESMNKELKK
IIGQVRDQXEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIT
KIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 340 a 132 c 205 g 180 t 7 other
ORIGIN
1 tttttagatg gaatagataa agcccaagaa gaacatgaaa aatatcacaa taattggaga
61 gcaatggcta gtgattttaa cctgccacct atagtagcaa aagaaatagt agccagctgt
121 gataaatgcc agctaaaagg agaagccatg catggacaag tagactgtag tccaggaata
181 tggcaactag actgtaccca tttagaagga aaaattatcc tggtagcagt tcatgtagcc
241 agtggatata tagaagcaga rgttattcct gcasagacag ggcaggaarc agcatacttt
301 atcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat
361 ttcaccagtg ctacagtyaa ggccgcctgt tggtgggcag gaatcaagca ggartttggc
421 attccccgca atccccaaag tcaaggagta gtagaatcta tgaataaaga attaaagaaa
481 attataggac aggtaagaga tcaggstgaa caccttaaga cagcagtaca aatggcagta
541 ttcatccaca attttaaaag aaaagggggg attggagggt acagtgcagg ggaaagaata
601 gtagacatca tagcaacaga catacaaact aaagaattac aaaagcaaat tacaaaaatt
661 caaaattttc gggtttatta cagggacagc agagayccaa tttggaaagg accagcaaaa
721 cttctctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaagtagtg
781 ccaagaagaa aagcaaaaat cattagggat tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022