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LOCUS	    GU121725		     864 bp    DNA     linear	VRL 11-NOV-2009
DEFINITION  HIV-1 isolate Virus49 from USA integrase (pol) gene, partial cds
ACCESSION   GU121725
VERSION     GU121725.1 GI:263201509
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 864)
            Show all sequences for reference 1
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Evolution of integrase resistance during failure of integrase
	    inhibitor-based antiretroviral therapy.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
  PUBMED    20300008
REFERENCE   2 (bases 1 to 864)
            Show all sequences for reference 2
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
	    Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES             Location/Qualifiers
     source	     1..864
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Virus49"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="04-Oct-2007"
     gene	     <1..>864
		     /gene="pol"
     CDS	     <1..>864
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ACY70289.1"
		     /db_xref="GI:263201510"
		     /translation="FLDGIDKAQEEHEKYHNNWRAMASDFNLPPIVAKEIVASCDKCQ
		     LKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAZTGQEXAYFIL
		     KLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPRNPQSQGVVESMNKELKK
		     IIGQVRDQXEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIT
		     KIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	340 a	 132 c	  205 g    180 t      7 other
ORIGIN
       1 tttttagatg gaatagataa agcccaagaa gaacatgaaa aatatcacaa taattggaga 
      61 gcaatggcta gtgattttaa cctgccacct atagtagcaa aagaaatagt agccagctgt 
     121 gataaatgcc agctaaaagg agaagccatg catggacaag tagactgtag tccaggaata 
     181 tggcaactag actgtaccca tttagaagga aaaattatcc tggtagcagt tcatgtagcc 
     241 agtggatata tagaagcaga rgttattcct gcasagacag ggcaggaarc agcatacttt 
     301 atcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat 
     361 ttcaccagtg ctacagtyaa ggccgcctgt tggtgggcag gaatcaagca ggartttggc 
     421 attccccgca atccccaaag tcaaggagta gtagaatcta tgaataaaga attaaagaaa 
     481 attataggac aggtaagaga tcaggstgaa caccttaaga cagcagtaca aatggcagta 
     541 ttcatccaca attttaaaag aaaagggggg attggagggt acagtgcagg ggaaagaata 
     601 gtagacatca tagcaacaga catacaaact aaagaattac aaaagcaaat tacaaaaatt 
     661 caaaattttc gggtttatta cagggacagc agagayccaa tttggaaagg accagcaaaa 
     721 cttctctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaagtagtg 
     781 ccaagaagaa aagcaaaaat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022


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