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LOCUS GU121723 864 bp DNA linear VRL 11-NOV-2009
DEFINITION HIV-1 isolate Virus47 from USA integrase (pol) gene, partial cds
ACCESSION GU121723
VERSION GU121723.1 GI:263201505
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 864)
Show all sequences for reference 1
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Evolution of integrase resistance during failure of integrase
inhibitor-based antiretroviral therapy.
JOURNAL J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
PUBMED 20300008
REFERENCE 2 (bases 1 to 864)
Show all sequences for reference 2
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES Location/Qualifiers
source 1..864
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="Virus47"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="07-Feb-2007"
gene <1..>864
/gene="pol"
CDS <1..>864
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ACY70287.1"
/db_xref="GI:263201506"
/translation="FLDGIDKAQEEHXKYHXNWRAMASDFNLPPIVAKEIVASCDKCQ
XKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFIL
KLAGRWPVKTIHTDNGGNFVSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT
KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 332 a 130 c 214 g 184 t 4 other
ORIGIN
1 tttttggatg gaatagataa ggcccaagaa gagcatgama aatatcacar taattggaga
61 gcaatggcta gtgattttaa cctgccacct atagtagcaa aagaaatagt agccagctgt
121 gataaatgtc agktaaaagg agaagccatg catggacaag tagactgtag tccaggaata
181 tggcagctag attgtacaca tttagaagga aaaatcatcc tggtagcagt ccatgtrgcc
241 agtggatata tagaagcaga agttattcca gcagaaacag ggcaggaaac agcatacttt
301 atcctaaaat tagcaggaag atggccagta aaaacaatac atacggataa tggcggcaat
361 ttcgtcagta ctactgttaa ggccgcctgc tggtgggcag ggatcaagca ggaatttggc
421 attccctaca accctcaaag tcaaggggta gtagaatcta tgaacaaaga attaaagaaa
481 attataggac aggtaagaga tcaagctgag catcttaaga cagcagtaca aatggcagta
541 ttcattcaca attttaaaag aaaagggggg attgggggat acagtgcagg ggaaagaata
601 gtagacataa tagcaacaga cttacaaact aaagaattac aaaaacaaat tacaaaaatt
661 caaaattttc gggtttatta cagggacagc agagatccac tttggaaagg accagcaaag
721 ctcctctgga aaggtgaagg ggcagtagta atacaggata atagtgacat aaaagtagtg
781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022