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LOCUS	    GU121723		     864 bp    DNA     linear	VRL 11-NOV-2009
DEFINITION  HIV-1 isolate Virus47 from USA integrase (pol) gene, partial cds
ACCESSION   GU121723
VERSION     GU121723.1 GI:263201505
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 864)
            Show all sequences for reference 1
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Evolution of integrase resistance during failure of integrase
	    inhibitor-based antiretroviral therapy.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
  PUBMED    20300008
REFERENCE   2 (bases 1 to 864)
            Show all sequences for reference 2
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
	    Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES             Location/Qualifiers
     source	     1..864
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Virus47"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="07-Feb-2007"
     gene	     <1..>864
		     /gene="pol"
     CDS	     <1..>864
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ACY70287.1"
		     /db_xref="GI:263201506"
		     /translation="FLDGIDKAQEEHXKYHXNWRAMASDFNLPPIVAKEIVASCDKCQ
		     XKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFIL
		     KLAGRWPVKTIHTDNGGNFVSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
		     IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQIT
		     KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	332 a	 130 c	  214 g    184 t      4 other
ORIGIN
       1 tttttggatg gaatagataa ggcccaagaa gagcatgama aatatcacar taattggaga 
      61 gcaatggcta gtgattttaa cctgccacct atagtagcaa aagaaatagt agccagctgt 
     121 gataaatgtc agktaaaagg agaagccatg catggacaag tagactgtag tccaggaata 
     181 tggcagctag attgtacaca tttagaagga aaaatcatcc tggtagcagt ccatgtrgcc 
     241 agtggatata tagaagcaga agttattcca gcagaaacag ggcaggaaac agcatacttt 
     301 atcctaaaat tagcaggaag atggccagta aaaacaatac atacggataa tggcggcaat 
     361 ttcgtcagta ctactgttaa ggccgcctgc tggtgggcag ggatcaagca ggaatttggc 
     421 attccctaca accctcaaag tcaaggggta gtagaatcta tgaacaaaga attaaagaaa 
     481 attataggac aggtaagaga tcaagctgag catcttaaga cagcagtaca aatggcagta 
     541 ttcattcaca attttaaaag aaaagggggg attgggggat acagtgcagg ggaaagaata 
     601 gtagacataa tagcaacaga cttacaaact aaagaattac aaaaacaaat tacaaaaatt 
     661 caaaattttc gggtttatta cagggacagc agagatccac tttggaaagg accagcaaag 
     721 ctcctctgga aaggtgaagg ggcagtagta atacaggata atagtgacat aaaagtagtg 
     781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022


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