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LOCUS	    GU121715		     864 bp    DNA     linear	VRL 11-NOV-2009
DEFINITION  HIV-1 isolate Virus39 from USA integrase (pol) gene, partial cds
ACCESSION   GU121715
VERSION     GU121715.1 GI:263201489
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 864)
            Show all sequences for reference 1
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Evolution of integrase resistance during failure of integrase
	    inhibitor-based antiretroviral therapy.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
  PUBMED    20300008
REFERENCE   2 (bases 1 to 864)
            Show all sequences for reference 2
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
	    Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES             Location/Qualifiers
     source	     1..864
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Virus39"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="15-Feb-2007"
     gene	     <1..>864
		     /gene="pol"
     CDS	     <1..>864
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ACY70279.1"
		     /db_xref="GI:263201490"
		     /translation="FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQ
		     LKGEAMHGQVDCSPGIWQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFJL
		     KLAGRWPVKXXHTDNGSNFTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
		     IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDJQTKELQKQIT
		     KIQNFRVYYRDXRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	331 a	 122 c	  203 g    177 t     31 other
ORIGIN
       1 tttttagatg gaatagataa rgcccaagaa gaacatgaga aatatcacag taattggaga 
      61 gcaatggcta gtgattttaa cctrccacct gtagtagcaa aagaaatagt agccagctgt 
     121 gataaatgtc agytaaaagg agaagccatg catggacaag tagactgtag tccaggaata 
     181 tggcarctag attgyacaca tttagaagga aaarttatcc tggtagcagt ycatgtagcc 
     241 agtggataya tagaagcaga agttattcca gcagaracag ggcaggaaac agcatacttt 
     301 mtcttaaaat tagcaggaag atggccagta aaaayartac atacagacaa tggcagyaat 
     361 ttcaccagyr ctachgttaa ggcygcctgt tggtgggcag ggatcaagca rgaatttggc 
     421 attccctaca atccccaaag tcaaggagta gtagaatcya tgaataarga attaaagaaa 
     481 attataggac aggtaagaga tcaggctgaa catcttaara cagcagtaca aatggcagta 
     541 ttcatycaca attttaaaag aaaagggggg attgggggrt acagtgcagg ggaaagaata 
     601 gtagayataa tagcaacaga cwtacaaact aaagaaytac aaaaacaaat tacaaaaatt 
     661 caaaattttc gggtttatta cagggacarc agagatccwc tttggaaagg accagcaaag 
     721 ctyctctgga aaggtgaagg ggcagtagtr atacaggata atagtgacat aaaagtagta 
     781 ccaagaagaa aagcaaaaat yattagggac tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022


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