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LOCUS GU121715 864 bp DNA linear VRL 11-NOV-2009
DEFINITION HIV-1 isolate Virus39 from USA integrase (pol) gene, partial cds
ACCESSION GU121715
VERSION GU121715.1 GI:263201489
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 864)
Show all sequences for reference 1
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Evolution of integrase resistance during failure of integrase
inhibitor-based antiretroviral therapy.
JOURNAL J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
PUBMED 20300008
REFERENCE 2 (bases 1 to 864)
Show all sequences for reference 2
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES Location/Qualifiers
source 1..864
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="Virus39"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="15-Feb-2007"
gene <1..>864
/gene="pol"
CDS <1..>864
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ACY70279.1"
/db_xref="GI:263201490"
/translation="FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQ
LKGEAMHGQVDCSPGIWQLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFJL
KLAGRWPVKXXHTDNGSNFTSXTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDJQTKELQKQIT
KIQNFRVYYRDXRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 331 a 122 c 203 g 177 t 31 other
ORIGIN
1 tttttagatg gaatagataa rgcccaagaa gaacatgaga aatatcacag taattggaga
61 gcaatggcta gtgattttaa cctrccacct gtagtagcaa aagaaatagt agccagctgt
121 gataaatgtc agytaaaagg agaagccatg catggacaag tagactgtag tccaggaata
181 tggcarctag attgyacaca tttagaagga aaarttatcc tggtagcagt ycatgtagcc
241 agtggataya tagaagcaga agttattcca gcagaracag ggcaggaaac agcatacttt
301 mtcttaaaat tagcaggaag atggccagta aaaayartac atacagacaa tggcagyaat
361 ttcaccagyr ctachgttaa ggcygcctgt tggtgggcag ggatcaagca rgaatttggc
421 attccctaca atccccaaag tcaaggagta gtagaatcya tgaataarga attaaagaaa
481 attataggac aggtaagaga tcaggctgaa catcttaara cagcagtaca aatggcagta
541 ttcatycaca attttaaaag aaaagggggg attgggggrt acagtgcagg ggaaagaata
601 gtagayataa tagcaacaga cwtacaaact aaagaaytac aaaaacaaat tacaaaaatt
661 caaaattttc gggtttatta cagggacarc agagatccwc tttggaaagg accagcaaag
721 ctyctctgga aaggtgaagg ggcagtagtr atacaggata atagtgacat aaaagtagta
781 ccaagaagaa aagcaaaaat yattagggac tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022