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LOCUS	    GU121713		     864 bp    DNA     linear	VRL 11-NOV-2009
DEFINITION  HIV-1 isolate Virus37 from USA integrase (pol) gene, partial cds
ACCESSION   GU121713
VERSION     GU121713.1 GI:263201485
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 864)
            Show all sequences for reference 1
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Evolution of integrase resistance during failure of integrase
	    inhibitor-based antiretroviral therapy.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
  PUBMED    20300008
REFERENCE   2 (bases 1 to 864)
            Show all sequences for reference 2
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
	    Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES             Location/Qualifiers
     source	     1..864
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Virus37"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="14-Feb-2007"
     gene	     <1..>864
		     /gene="pol"
     CDS	     <1..>864
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ACY70277.1"
		     /db_xref="GI:263201486"
		     /translation="FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQ
		     LKGEAMHGQVDCSPGIWXLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFJL
		     KLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQXFXIPYNPQSXGVVESMNXELKK
		     IIGQVRDQAXHLKTAVQMAVFIHNFKRKGGIGGYSAGERIXDIIATDJQTKELQKQIT
		     KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKXVPRRKAKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	336 a	 128 c	  202 g    177 t     21 other
ORIGIN
       1 tttttagatg gaatagataa ggcccaagaa gaacatgara aatatcataa taattggaga 
      61 gcaatggcta gtgattttaa cctgccacca gtagtagcaa aagaaatagt agccagctgt 
     121 gayaaatgcc aactaaaagg agaagccatg catggacaag tagactgyag tccaggaata 
     181 tggyaactag attgtacaca tttagaagga aaarttatcc tggtagcagt tcatgtagcc 
     241 agtggataya tagaagcaga agttatycca gcagaaacag ggcaggaaac agcatactty 
     301 mttttaaaac tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat 
     361 ttcaccagca ccacggttaa ggccgcctgt tggtgggcag gratcaagca ggmatttrgc 
     421 attccctaca atccccaaag tcamggagta gtagaatcta tgaataadga attaaagaaa 
     481 attataggac aagtaagaga tcaggctraa catcttaaga cagcagtaca aatggcagta 
     541 ttcatmcaca attttaaaag aaaagggggg attggrgggt acagtgcagg ggaaagaata 
     601 rtagatataa tagcaacaga cwtacaaact aaagaactac aaaaacaaat tacaaaaatt 
     661 caaaattttc gggtttatta cagggacagc agagatcctc tttggaaagg accagcaaag 
     721 cttctctgga aaggtgaagg ggcagtagta atacargata atagtgacat aaaagyagtg 
     781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022


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