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LOCUS GU121713 864 bp DNA linear VRL 11-NOV-2009
DEFINITION HIV-1 isolate Virus37 from USA integrase (pol) gene, partial cds
ACCESSION GU121713
VERSION GU121713.1 GI:263201485
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 864)
Show all sequences for reference 1
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Evolution of integrase resistance during failure of integrase
inhibitor-based antiretroviral therapy.
JOURNAL J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
PUBMED 20300008
REFERENCE 2 (bases 1 to 864)
Show all sequences for reference 2
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES Location/Qualifiers
source 1..864
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="Virus37"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="14-Feb-2007"
gene <1..>864
/gene="pol"
CDS <1..>864
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ACY70277.1"
/db_xref="GI:263201486"
/translation="FLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQ
LKGEAMHGQVDCSPGIWXLDCTHLEGKXILVAVHVASGYIEAEVIPAETGQETAYFJL
KLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQXFXIPYNPQSXGVVESMNXELKK
IIGQVRDQAXHLKTAVQMAVFIHNFKRKGGIGGYSAGERIXDIIATDJQTKELQKQIT
KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKXVPRRKAKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 336 a 128 c 202 g 177 t 21 other
ORIGIN
1 tttttagatg gaatagataa ggcccaagaa gaacatgara aatatcataa taattggaga
61 gcaatggcta gtgattttaa cctgccacca gtagtagcaa aagaaatagt agccagctgt
121 gayaaatgcc aactaaaagg agaagccatg catggacaag tagactgyag tccaggaata
181 tggyaactag attgtacaca tttagaagga aaarttatcc tggtagcagt tcatgtagcc
241 agtggataya tagaagcaga agttatycca gcagaaacag ggcaggaaac agcatactty
301 mttttaaaac tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat
361 ttcaccagca ccacggttaa ggccgcctgt tggtgggcag gratcaagca ggmatttrgc
421 attccctaca atccccaaag tcamggagta gtagaatcta tgaataadga attaaagaaa
481 attataggac aagtaagaga tcaggctraa catcttaaga cagcagtaca aatggcagta
541 ttcatmcaca attttaaaag aaaagggggg attggrgggt acagtgcagg ggaaagaata
601 rtagatataa tagcaacaga cwtacaaact aaagaactac aaaaacaaat tacaaaaatt
661 caaaattttc gggtttatta cagggacagc agagatcctc tttggaaagg accagcaaag
721 cttctctgga aaggtgaagg ggcagtagta atacargata atagtgacat aaaagyagtg
781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022