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LOCUS GU121682 864 bp DNA linear VRL 11-NOV-2009
DEFINITION HIV-1 isolate Virus6 from USA integrase (pol) gene, partial cds
ACCESSION GU121682
VERSION GU121682.1 GI:263201423
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 864)
Show all sequences for reference 1
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Evolution of integrase resistance during failure of integrase
inhibitor-based antiretroviral therapy.
JOURNAL J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
PUBMED 20300008
REFERENCE 2 (bases 1 to 864)
Show all sequences for reference 2
AUTHORS Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
Deeks,S.G.
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES Location/Qualifiers
source 1..864
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="Virus6"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="12-Jun-2007"
gene <1..>864
/gene="pol"
CDS <1..>864
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ACY70246.1"
/db_xref="GI:263201424"
/translation="FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQ
LKGEAMHGQVDCSPGIWQLDCTHLEGKVIMVAVHVASGYIEAEVJPAETGQETAYFLL
KLAXRWPVKIVHTDNGSNFTSNAVKAACWWAGXKQEFGIPYNPQSQGVIESMNKELKK
IIGQVRDQAEHLKTAXQMAVFIHNFKRKGGIGGYSAGERIVDIIASEIQTKELQKQIT
KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 335 a 125 c 212 g 184 t 8 other
ORIGIN
1 tttttagatg gaatagataa ggcccaagaa gaacatgaga aatatcacag taattggaga
61 gcaatggcta gtgattttaa cctaccacct atagtagcaa aagaaatagt agccagctgt
121 gataaatgtc agctaaaagg agaagccatg catggacaag tagactgtag tccaggaata
181 tggcagctag attgtacaca tttagaagga aaagttatca tggtagcagt tcatgtagcc
241 agtggatata tagaagcaga agttmttcca gcagagacag ggcaagarac agcatactty
301 cttttaaaat tagcagsaag atggccagta aaaatagtac atacagacaa tggcagcaat
361 ttcaccagta atgcggttaa ggccgcctgt tggtgggcgg ggrtcaagca ggaatttggc
421 attccytaca atccccaaag tcaaggagta atagaatcca tgaataaaga attaaagaaa
481 attataggac aggtaagaga tcaggctgaa catcttaaga cagcaktaca aatggcagta
541 ttcatccaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata
601 gtagacataa tagcatcaga aatacaaact aaagaattac aaaaacaaat tacaaagatt
661 caaaattttc gggtctatta cagggacagc agagayccac tttggaaagg accagcaaag
721 cttctctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaagtagtg
781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022