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LOCUS	    GU121682		     864 bp    DNA     linear	VRL 11-NOV-2009
DEFINITION  HIV-1 isolate Virus6 from USA integrase (pol) gene, partial cds
ACCESSION   GU121682
VERSION     GU121682.1 GI:263201423
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 864)
            Show all sequences for reference 1
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Evolution of integrase resistance during failure of integrase
	    inhibitor-based antiretroviral therapy.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 54(4); 389-93 (2010)
  PUBMED    20300008
REFERENCE   2 (bases 1 to 864)
            Show all sequences for reference 2
  AUTHORS   Hatano,H., Lampiris,H., Fransen,S., Gupta,S., Huang,W., Hoh,R.,
	    Martin,J.N., Lalezari,J., Bangsberg,D., Petropoulos,C. and
	    Deeks,S.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2009) Medicine/AIDS, UCSF, 995 Potrero Avenue,
	    Building 80, Ward 84, San Francisco, CA 94110, USA
FEATURES             Location/Qualifiers
     source	     1..864
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Virus6"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="12-Jun-2007"
     gene	     <1..>864
		     /gene="pol"
     CDS	     <1..>864
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ACY70246.1"
		     /db_xref="GI:263201424"
		     /translation="FLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQ
		     LKGEAMHGQVDCSPGIWQLDCTHLEGKVIMVAVHVASGYIEAEVJPAETGQETAYFLL
		     KLAXRWPVKIVHTDNGSNFTSNAVKAACWWAGXKQEFGIPYNPQSQGVIESMNKELKK
		     IIGQVRDQAEHLKTAXQMAVFIHNFKRKGGIGGYSAGERIVDIIASEIQTKELQKQIT
		     KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	335 a	 125 c	  212 g    184 t      8 other
ORIGIN
       1 tttttagatg gaatagataa ggcccaagaa gaacatgaga aatatcacag taattggaga 
      61 gcaatggcta gtgattttaa cctaccacct atagtagcaa aagaaatagt agccagctgt 
     121 gataaatgtc agctaaaagg agaagccatg catggacaag tagactgtag tccaggaata 
     181 tggcagctag attgtacaca tttagaagga aaagttatca tggtagcagt tcatgtagcc 
     241 agtggatata tagaagcaga agttmttcca gcagagacag ggcaagarac agcatactty 
     301 cttttaaaat tagcagsaag atggccagta aaaatagtac atacagacaa tggcagcaat 
     361 ttcaccagta atgcggttaa ggccgcctgt tggtgggcgg ggrtcaagca ggaatttggc 
     421 attccytaca atccccaaag tcaaggagta atagaatcca tgaataaaga attaaagaaa 
     481 attataggac aggtaagaga tcaggctgaa catcttaaga cagcaktaca aatggcagta 
     541 ttcatccaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata 
     601 gtagacataa tagcatcaga aatacaaact aaagaattac aaaaacaaat tacaaagatt 
     661 caaaattttc gggtctatta cagggacagc agagayccac tttggaaagg accagcaaag 
     721 cttctctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaagtagtg 
     781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022


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