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LOCUS GU059330 1274 bp DNA linear VRL 07-MAR-2010
DEFINITION HIV-1 isolate 301V04004442BM from Uganda pol protein (pol) gene,
partial cds
ACCESSION GU059330
VERSION GU059330.1 GI:290083463
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1274)
Show all sequences for reference 1
AUTHORS Hudelson,S.E., McConnell,M.S., Bagenda,D., Piwowar-Manning,E.,
Parsons,T.L., Nolan,M.L., Bakaki,P.M., Thigpen,M.C., Mubiru,M.,
Fowler,M.G. and Eshleman,S.H.
TITLE Emergence and persistence of nevirapine resistance in breast milk
after single-dose nevirapine administration.
JOURNAL AIDS. 24(4); 557-61 (2010)
PUBMED 20057308
REFERENCE 2 (bases 1 to 1274)
Show all sequences for reference 2
AUTHORS Hudelson,S.E., McConnell,M.S., Bagenda,D., Piwowar-Manning,E.,
Parsons,T.L., Nolan,M.L., Bakaki,P.M., Thigpen,M.C., Mubiru,M.,
Fowler,M.G. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (02-OCT-2009) Pathology, The Johns Hopkins Medical
Institutions, 720 Rutland Ave., Ross Bldg. 646, Baltimore, MD
21050, USA
FEATURES Location/Qualifiers
source 1..1274
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="301V04004442BM"
/isolation_source="postpartum breast milk"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Uganda"
/collection_date="23-Mar-2004"
gene <1..>1274
/gene="pol"
CDS <1..>1274
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADD23063.1"
/db_xref="GI:290083464"
/translation="PQITLWQRPLVTVKIGGQIKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILVEICGYKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
SIETVPVKLKPGMDGPKVKQWPLTEEKIKALTVICTELEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFKELNKRTQDFWEVQLGIPHPAGLKKRKSVTVLDVGDAYFSVP
LYEDFKKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRIKIEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKCLRGTKALTEVV
PLTEEAELELAENREILKEPVHGVYYDPSKDL"
BASE COUNT 515 a 200 c 256 g 302 t 1 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa agataggagg acagataaag
61 gaagctctat tagatacagg agcagatgac acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat
181 caaatactcg tagaaatctg tggatataaa gctataggta cagtactagt aggacccaca
241 cctgttaaca taattggaag aaatttgttg acacagattg gttgcacttt aaattttcca
301 attagttcta ttgaaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt
361 aaacaatggc cgttgacaga agaaaaaata aaagcactaa cagtaatttg tacagaattg
421 gagaaggaag gaaaaatttc aaaaattggg cctgaraatc catacaatac tccaatattt
481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttcaa agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacaccctgc agggctaaaa
601 aagaggaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttatat
661 gaagacttta aaaaatatac tgcatttacc atacctagta taaataatga gacaccagga
721 attagatatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccaa
781 tgtagcatga caaaaatttt agaacctttt agaaaacaaa atccagaaat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacagca tagaataaaa
901 attgaagaat taagaggaca tctattgaag tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agttgccaga aaaagaaagc tggactgtca atgatataca gaaattagtg
1081 ggaaaattaa attgggcaag ccagatttat ccaggaatta aagtaagaca attatgcaaa
1141 tgccttaggg gaaccaaagc actgacagaa gtagtaccac taacagaaga agcagaatta
1201 gaactggcag aaaacaggga aattcttaaa gaaccagtac atggagtgta ttatgaccca
1261 tcaaaagact taat
//
last modified: Tue May 31 10:56 2022