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LOCUS GU059329 1302 bp DNA linear VRL 07-MAR-2010
DEFINITION HIV-1 isolate 301V04004389 from Uganda pol protein (pol) gene,
partial cds
ACCESSION GU059329
VERSION GU059329.1 GI:290083461
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Hudelson,S.E., McConnell,M.S., Bagenda,D., Piwowar-Manning,E.,
Parsons,T.L., Nolan,M.L., Bakaki,P.M., Thigpen,M.C., Mubiru,M.,
Fowler,M.G. and Eshleman,S.H.
TITLE Emergence and persistence of nevirapine resistance in breast milk
after single-dose nevirapine administration.
JOURNAL AIDS. 24(4); 557-61 (2010)
PUBMED 20057308
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Hudelson,S.E., McConnell,M.S., Bagenda,D., Piwowar-Manning,E.,
Parsons,T.L., Nolan,M.L., Bakaki,P.M., Thigpen,M.C., Mubiru,M.,
Fowler,M.G. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (02-OCT-2009) Pathology, The Johns Hopkins Medical
Institutions, 720 Rutland Ave., Ross Bldg. 646, Baltimore, MD
21050, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="301V04004389"
/isolation_source="postpartum plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Uganda"
/collection_date="23-Mar-2004"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADD23062.1"
/db_xref="GI:290083462"
/translation="PQITLWQRPLVTVKIGGQIKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILVEICGYKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
SIETVPVKLKPGMDGPKVKQWPLTEEKIKALTXICXELEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKRKSVTVLDVGDAYFSVP
LYEDFKKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRIKIEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKCLRGTKALTEVV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT 530 a 204 c 264 g 300 t 4 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa agataggagg acagataaag
61 gaagctctay tagatacagg agcagatgac acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat
181 caaatactcg tagaaatctg tggatataaa gctataggta cagtactagt aggacccaca
241 cctgttaaca taattggaag aaatttgttg acacagattg gttgcacttt aaattttcca
301 attagttcta ttgaaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt
361 aaacaatggc cgttgacaga agaaaaaata aaagcactaa cagmaatttg tayagaattg
421 gagaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacaccctgc agggctaaaa
601 aagaggaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttatat
661 gaagacttta aaaaatatac tgcatttacc atacctagta taaataatga gacaccagga
721 attagatatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccaa
781 tgtagcatga caaaaatytt agaacctttt agaaaacaaa atccagaaat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacagca tagaataaaa
901 attgaagaat taagaggaca tctattgaag tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agttgccaga aaaagaaagc tggactgtca atgatataca gaaattagtg
1081 ggaaaattaa attgggcaag ccagatttat ccaggaatta aagtaagaca attatgcaaa
1141 tgccttaggg gaaccaaagc actgacagaa gtagtaccac taacagaaga agcagaatta
1201 gaactggcag aaaacaggga aattcttaaa gaaccagtac atggagtgta ttatgaccca
1261 tcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022