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LOCUS	    GU059329		    1302 bp    DNA     linear	VRL 07-MAR-2010
DEFINITION  HIV-1 isolate 301V04004389 from Uganda pol protein (pol) gene,
	    partial cds
ACCESSION   GU059329
VERSION     GU059329.1 GI:290083461
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Hudelson,S.E., McConnell,M.S., Bagenda,D., Piwowar-Manning,E.,
	    Parsons,T.L., Nolan,M.L., Bakaki,P.M., Thigpen,M.C., Mubiru,M.,
	    Fowler,M.G. and Eshleman,S.H.
  TITLE     Emergence and persistence of nevirapine resistance in breast milk
	    after single-dose nevirapine administration.
  JOURNAL   AIDS. 24(4); 557-61 (2010)
  PUBMED    20057308
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Hudelson,S.E., McConnell,M.S., Bagenda,D., Piwowar-Manning,E.,
	    Parsons,T.L., Nolan,M.L., Bakaki,P.M., Thigpen,M.C., Mubiru,M.,
	    Fowler,M.G. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2009) Pathology, The Johns Hopkins Medical
	    Institutions, 720 Rutland Ave., Ross Bldg. 646, Baltimore, MD
	    21050, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="301V04004389"
		     /isolation_source="postpartum plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /collection_date="23-Mar-2004"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADD23062.1"
		     /db_xref="GI:290083462"
		     /translation="PQITLWQRPLVTVKIGGQIKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILVEICGYKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     SIETVPVKLKPGMDGPKVKQWPLTEEKIKALTXICXELEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKRKSVTVLDVGDAYFSVP
		     LYEDFKKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRIKIEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKCLRGTKALTEVV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT	530 a	 204 c	  264 g    300 t      4 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacagtaa agataggagg acagataaag 
      61 gaagctctay tagatacagg agcagatgac acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat 
     181 caaatactcg tagaaatctg tggatataaa gctataggta cagtactagt aggacccaca 
     241 cctgttaaca taattggaag aaatttgttg acacagattg gttgcacttt aaattttcca 
     301 attagttcta ttgaaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt 
     361 aaacaatggc cgttgacaga agaaaaaata aaagcactaa cagmaatttg tayagaattg 
     421 gagaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacaccctgc agggctaaaa 
     601 aagaggaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttatat 
     661 gaagacttta aaaaatatac tgcatttacc atacctagta taaataatga gacaccagga 
     721 attagatatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccaa 
     781 tgtagcatga caaaaatytt agaacctttt agaaaacaaa atccagaaat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacagca tagaataaaa 
     901 attgaagaat taagaggaca tctattgaag tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agttgccaga aaaagaaagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaattaa attgggcaag ccagatttat ccaggaatta aagtaagaca attatgcaaa 
    1141 tgccttaggg gaaccaaagc actgacagaa gtagtaccac taacagaaga agcagaatta 
    1201 gaactggcag aaaacaggga aattcttaaa gaaccagtac atggagtgta ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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