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LOCUS	    GQ868862		     615 bp    DNA     linear	VRL 10-OCT-2009
DEFINITION  HIV-1 isolate AZ2059 from USA nef protein (nef) gene, partial cds
ACCESSION   GQ868862
VERSION     GQ868862.1 GI:260514105
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 615)
            Show all sequences for reference 1
  AUTHORS   Lamers,S.L., Salemi,M., Galligan,D.C., Morris,A., Gray,R.,
	    Fogel,G., Zhao,L. and McGrath,M.S.
  TITLE     Human immunodeficiency virus-1 evolutionary patterns associated
	    with pathogenic processes in the brain.
  JOURNAL   J. Neurovirol.. 16(3); 230-41 (2010)
  PUBMED    20367240
REFERENCE   2 (bases 1 to 615)
            Show all sequences for reference 2
  AUTHORS   Lamers,S.L., Salemi,M., Galligan,D., Morris,A., Gray,R., Fogel,G.,
	    de Oliveira,T., Zhao,L. and McGrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2009) Department of Laboratory Medicine, Positive
	    Health Program, University of California, San Francisco, San
	    Francisco, CA 94110, USA
FEATURES             Location/Qualifiers
     source	     1..615
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="AZ2059"
		     /isolation_source="brain"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2003"
     gene	     <1..>615
		     /gene="nef"
     CDS	     <1..>615
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ACX42763.1"
		     /db_xref="GI:260514106"
		     /translation="MGGKWSKSSVIGWPAIRERMRRAEPAAEGVGAASRDLEKHGAIT
		     SSNTAATNADVAWLEAQEDEEVGFPVKPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIY
		     SQKRQDILDLWVYHTQGYFPDWQNYTQGPGVRFPLTFGWCFKLVPVEPEKIEEANAGE
		     NNCLLHPMSQHGMDDPEKEVLVWKFDSRLAFHHIAREMHPEYYKN"
BASE COUNT	194 a	 126 c	  171 g    124 t
ORIGIN
       1 atgggtggca agtggtcaaa aagtagtgtg attggatggc ctgctataag ggaaagaatg 
      61 agacgagctg agccagcagc agaaggggtg ggagcagcat ctcgagacct agaaaaacat 
     121 ggagcaatca caagtagcaa tacagcagct accaatgctg atgttgcctg gctggaagcc 
     181 caagaggatg aggaggtggg ttttccagtc aagcctcagg tacccttaag accaatgact 
     241 tacaaggcag ctgtagatct tagccacttt ttaaaagaaa aggggggact ggaagggtta 
     301 atttactccc agaaaagaca agatatcctt gatttgtggg tctaccacac acaaggctac 
     361 ttccctgatt ggcagaacta cacacaaggg ccaggggtca gatttccact gacctttgga 
     421 tggtgcttca agctagtacc agtggagcca gagaaaatag aagaggccaa tgcaggagag 
     481 aacaactgct tgttacaccc tatgagccaa catggaatgg atgacccaga gaaagaagtg 
     541 ttagtgtgga agtttgacag ccgcctggca tttcatcaca tagcccgaga gatgcatccg 
     601 gagtactaca agaac
//
last modified: Tue May 31 10:56 2022


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