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LOCUS	    GQ859342		    1306 bp    DNA     linear	VRL 06-OCT-2009
DEFINITION  HIV-1 clone LSC63M1201cent2-2 from USA vif protein (vif) gene,
	    partial cds; and vpr protein (vpr) and vpu protein (vpu) genes,
	    complete cds
ACCESSION   GQ859342
VERSION     GQ859342.1 GI:260179516
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1306)
            Show all sequences for reference 1
  AUTHORS   Liu,Y., Woodward,A., Zhu,H., Andrus,T., McNevin,J., Lee,J.,
	    Mullins,J.I., Corey,L., McElrath,M.J. and Zhu,T.
  TITLE     Preinfection human immunodeficiency virus (HIV)-specific cytotoxic
	    T lymphocytes failed to prevent HIV type 1 infection from strains
	    genetically unrelated to viruses in long-term exposed partners
  JOURNAL   J. Virol. 83 (20), 10821-10829 (2009)
  PUBMED    19706711
REFERENCE   2 (bases 1 to 1306)
            Show all sequences for reference 2
  AUTHORS   Liu,Y., Woodward,A., Zhu,H., Andrus,T., McNevin,J., Lee,J.,
	    Mullins,J.I., Corey,L., McElrath,M.J. and Zhu,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-AUG-2009) Laboratory Medicine, University of
	    Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..1306
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="LSC63 monocytes"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="LSC63M1201cent2-2"
		     /country="USA"
		     /collection_date="Dec-2001"
     gene	     <1..549
		     /gene="vif"
     CDS	     <1..549
		     /gene="vif"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vif protein"
		     /protein_id="ACX34395.1"
		     /db_xref="GI:260179517"
		     /translation="WQVDRMRIRTWKSLVKHHMYRSKKAKGWFYRHHYESTHPRMSSE
		     VHIPLGDARLVITTYWGLHTGEREWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYF
		     DCFSESAIRNALLGQIVSPRCEYQAGHNKVGSLQYLALAALITPKKAKPPLPSVTKLT
		     EDRWNKPQRTKGHRGSHTMNGH"
     gene	     489..779
		     /gene="vpr"
     CDS	     489..779
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="ACX34396.1"
		     /db_xref="GI:260179518"
		     /translation="MEQAPEDQGPQREPYNEWTLELLEELKNEAVGHFPRPWLHGLGQ
		     HIYETYGDTWEGVEAIIRILQQLLFIHFRIGCHHSRIGIIRQRRARNGSSRS"
     gene	     991..1236
		     /gene="vpu"
     CDS	     991..1236
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ACX34397.1"
		     /db_xref="GI:260179519"
		     /translation="MQPLEIVTIVALVVAIIIAIVVWSIVFIEYKKIRRQNKIDRLID
		     RIRDRAEDSGNDSDGDQEELSALVEMGHHAPWDIDDL"
BASE COUNT	456 a	 222 c	  320 g    308 t
ORIGIN
       1 tggcaagtag acaggatgag gattagaaca tggaaaagtt tagtaaaaca ccatatgtat 
      61 aggtcaaaga aagctaaggg atggttttat agacatcact atgaaagcac tcatccaaga 
     121 atgagttcag aagtgcacat accactaggg gatgctagat tggtaataac aacatattgg 
     181 ggtctgcata caggagaaag agaatggcat ttgggtcagg gagtctccat agagtggagg 
     241 aaaaggagat atagcacaca agtagaccct ggattagcag accaactaat tcatctgtat 
     301 tactttgatt gtttttcaga atctgctata agaaatgccc tattagggca gatagttagc 
     361 cctaggtgtg aatatcaagc aggacataac aaggtagggt ctctacaata cttggcatta 
     421 gcagcactaa taacaccaaa aaaggcaaag ccacctttgc ctagtgttac gaagctgaca 
     481 gaggatagat ggaacaagcc ccagaggacc aagggccaca gagggagcca tacaatgaat 
     541 ggacactaga gcttttagag gaacttaaaa atgaagctgt tggacatttt cctaggccat 
     601 ggcttcatgg cttagggcaa catatctatg aaacttatgg ggatacttgg gaaggagtgg 
     661 aagccataat aagaattctg caacaactgc tgtttattca tttcagaatt gggtgccacc 
     721 atagcagaat aggcattatt cgacagagaa gagcaagaaa tggatccagt agatcctaga 
     781 ctagagccct ggaagcatcc aggaagtcag cctaagactg cttgtaccaa atgctattgt 
     841 aaaaagtgtt gcttacattg ccaagtttgt ttcatacaaa aaggcttagg catctcctat 
     901 ggcaggaaga agcggagtca gcgacgaaga actcctcagg gtggtcagac taatcaaact 
     961 tctccatcaa agcagtaagt agtacatgta atgcaacctt tagagatagt aacaatagta 
    1021 gcattagtag tagcaataat aatagcaata gttgtgtggt ctatagtatt catagaatat 
    1081 aagaaaataa gaagacagaa caaaatagac aggttaattg atagaataag agacagagca 
    1141 gaggacagtg gcaatgacag tgatggggac caggaggaat tatcagcact tgtggaaatg 
    1201 gggcaccatg ctccttggga tattgatgat ctgtagtgct acagaaaact tgtgggtcac 
    1261 agtctattat ggggtacctg tgtggaaaga agcaatcacc actcta
//
last modified: Tue May 31 10:56 2022


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