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LOCUS GQ859342 1306 bp DNA linear VRL 06-OCT-2009
DEFINITION HIV-1 clone LSC63M1201cent2-2 from USA vif protein (vif) gene,
partial cds; and vpr protein (vpr) and vpu protein (vpu) genes,
complete cds
ACCESSION GQ859342
VERSION GQ859342.1 GI:260179516
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1306)
Show all sequences for reference 1
AUTHORS Liu,Y., Woodward,A., Zhu,H., Andrus,T., McNevin,J., Lee,J.,
Mullins,J.I., Corey,L., McElrath,M.J. and Zhu,T.
TITLE Preinfection human immunodeficiency virus (HIV)-specific cytotoxic
T lymphocytes failed to prevent HIV type 1 infection from strains
genetically unrelated to viruses in long-term exposed partners
JOURNAL J. Virol. 83 (20), 10821-10829 (2009)
PUBMED 19706711
REFERENCE 2 (bases 1 to 1306)
Show all sequences for reference 2
AUTHORS Liu,Y., Woodward,A., Zhu,H., Andrus,T., McNevin,J., Lee,J.,
Mullins,J.I., Corey,L., McElrath,M.J. and Zhu,T.
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2009) Laboratory Medicine, University of
Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..1306
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="LSC63 monocytes"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="LSC63M1201cent2-2"
/country="USA"
/collection_date="Dec-2001"
gene <1..549
/gene="vif"
CDS <1..549
/gene="vif"
/codon_start="1"
/transl_table="1"
/product="vif protein"
/protein_id="ACX34395.1"
/db_xref="GI:260179517"
/translation="WQVDRMRIRTWKSLVKHHMYRSKKAKGWFYRHHYESTHPRMSSE
VHIPLGDARLVITTYWGLHTGEREWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYF
DCFSESAIRNALLGQIVSPRCEYQAGHNKVGSLQYLALAALITPKKAKPPLPSVTKLT
EDRWNKPQRTKGHRGSHTMNGH"
gene 489..779
/gene="vpr"
CDS 489..779
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="ACX34396.1"
/db_xref="GI:260179518"
/translation="MEQAPEDQGPQREPYNEWTLELLEELKNEAVGHFPRPWLHGLGQ
HIYETYGDTWEGVEAIIRILQQLLFIHFRIGCHHSRIGIIRQRRARNGSSRS"
gene 991..1236
/gene="vpu"
CDS 991..1236
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="ACX34397.1"
/db_xref="GI:260179519"
/translation="MQPLEIVTIVALVVAIIIAIVVWSIVFIEYKKIRRQNKIDRLID
RIRDRAEDSGNDSDGDQEELSALVEMGHHAPWDIDDL"
BASE COUNT 456 a 222 c 320 g 308 t
ORIGIN
1 tggcaagtag acaggatgag gattagaaca tggaaaagtt tagtaaaaca ccatatgtat
61 aggtcaaaga aagctaaggg atggttttat agacatcact atgaaagcac tcatccaaga
121 atgagttcag aagtgcacat accactaggg gatgctagat tggtaataac aacatattgg
181 ggtctgcata caggagaaag agaatggcat ttgggtcagg gagtctccat agagtggagg
241 aaaaggagat atagcacaca agtagaccct ggattagcag accaactaat tcatctgtat
301 tactttgatt gtttttcaga atctgctata agaaatgccc tattagggca gatagttagc
361 cctaggtgtg aatatcaagc aggacataac aaggtagggt ctctacaata cttggcatta
421 gcagcactaa taacaccaaa aaaggcaaag ccacctttgc ctagtgttac gaagctgaca
481 gaggatagat ggaacaagcc ccagaggacc aagggccaca gagggagcca tacaatgaat
541 ggacactaga gcttttagag gaacttaaaa atgaagctgt tggacatttt cctaggccat
601 ggcttcatgg cttagggcaa catatctatg aaacttatgg ggatacttgg gaaggagtgg
661 aagccataat aagaattctg caacaactgc tgtttattca tttcagaatt gggtgccacc
721 atagcagaat aggcattatt cgacagagaa gagcaagaaa tggatccagt agatcctaga
781 ctagagccct ggaagcatcc aggaagtcag cctaagactg cttgtaccaa atgctattgt
841 aaaaagtgtt gcttacattg ccaagtttgt ttcatacaaa aaggcttagg catctcctat
901 ggcaggaaga agcggagtca gcgacgaaga actcctcagg gtggtcagac taatcaaact
961 tctccatcaa agcagtaagt agtacatgta atgcaacctt tagagatagt aacaatagta
1021 gcattagtag tagcaataat aatagcaata gttgtgtggt ctatagtatt catagaatat
1081 aagaaaataa gaagacagaa caaaatagac aggttaattg atagaataag agacagagca
1141 gaggacagtg gcaatgacag tgatggggac caggaggaat tatcagcact tgtggaaatg
1201 gggcaccatg ctccttggga tattgatgat ctgtagtgct acagaaaact tgtgggtcac
1261 agtctattat ggggtacctg tgtggaaaga agcaatcacc actcta
//
last modified: Tue May 31 10:56 2022