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LOCUS GQ859333 1722 bp DNA linear VRL 06-OCT-2009
DEFINITION HIV-1 clone LSC63T1201gp1202-2 from USA envelope glycoprotein (env)
gene, partial cds
ACCESSION GQ859333
VERSION GQ859333.1 GI:260179492
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1722)
Show all sequences for reference 1
AUTHORS Liu,Y., Woodward,A., Zhu,H., Andrus,T., McNevin,J., Lee,J.,
Mullins,J.I., Corey,L., McElrath,M.J. and Zhu,T.
TITLE Preinfection human immunodeficiency virus (HIV)-specific cytotoxic
T lymphocytes failed to prevent HIV type 1 infection from strains
genetically unrelated to viruses in long-term exposed partners
JOURNAL J. Virol. 83 (20), 10821-10829 (2009)
PUBMED 19706711
REFERENCE 2 (bases 1 to 1722)
Show all sequences for reference 2
AUTHORS Liu,Y., Woodward,A., Zhu,H., Andrus,T., McNevin,J., Lee,J.,
Mullins,J.I., Corey,L., McElrath,M.J. and Zhu,T.
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2009) Laboratory Medicine, University of
Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..1722
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="LSC63 T cells"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="LSC63T1201gp1202-2"
/country="USA"
/collection_date="Dec-2001"
gene <1..>1722
/gene="env"
CDS <1..>1722
/gene="env"
/note="contains gp120"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACX34380.1"
/db_xref="GI:260179493"
/translation="TVMGTRRNYQHLWKWGTMLLGILMICSATENLWVTVYYGVPVWK
EAITTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLKNVTENFNMWKNNMVEQM
HEDIISLWDQSLKPCVELTPLCVTLNCSDLNVNSTDLKNVTNWEIREKGGIKNCSFNT
TTSMTDKRQKEYALFYRMDIVPLDDSPKNSSNYTNYRLISCNTSVITQACPKVSFEPI
PIHYCAPAGFAILKCNDKKFNGTGACTNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIV
IRSENFSDNAKTILVQLKDAVQINCTRPSNNTSKGIHIGPGRAFYTTGRIIGDIRQAH
CNISGLQWNNTLRQIAEKLRKQFNNETTIVFKNSSGGDPEIVMHSFNCGGEFFYCNST
KLFNSTWDKNNIEGFNNTGGSNDTITLQCRIKQIINMWQKVGKAMYAPPIRGQIRCTS
NITGLILTRDGGNNNNNTHETFRPGGGNMKDNWRSELYKYKVVRIEPLGVAPTRAKRR
VVQREKRAVGIGALFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQ
QHLLQLTV"
BASE COUNT 633 a 291 c 382 g 416 t
ORIGIN
1 acagtgatgg ggaccaggag gaattatcag cacttgtgga aatggggcac catgctcctt
61 gggatattga tgatctgtag tgctacagaa aacttgtggg tcacagtcta ttatggggta
121 cctgtgtgga aagaagcaat caccactcta ttttgcgcat cagatgctaa agcatatgat
181 acagaggtac ataatgtttg ggccacacat gcctgtgtac ccacagaccc caacccacaa
241 gaagtagtat tgaaaaatgt gacagaaaat tttaacatgt ggaaaaataa catggtggaa
301 cagatgcatg aggatataat cagtttatgg gatcaaagcc taaagccatg tgtagaatta
361 accccactct gtgttactct aaattgctct gatctgaatg ttaatagcac tgatctgaag
421 aatgttacta actgggaaat aagggaaaaa ggaggaataa aaaactgttc tttcaatacc
481 accacaagca tgacagataa gagacagaaa gagtatgcat tgttttatag aatggatata
541 gtaccattag atgatagtcc taaaaatagt tctaattata ccaactatag gctgataagt
601 tgtaacacct cagtcattac acaggcctgt ccaaaggtct cctttgagcc aattcccata
661 cattattgtg ccccggctgg ttttgcgatt ctaaaatgca atgataagaa attcaatgga
721 acaggagcat gtacaaatgt cagcacagta cagtgtacac atgggattaa gccagtagta
781 tcaactcaac tgctgttaaa tggcagtcta gcagaagaag agatagtaat tagatctgaa
841 aatttctcag acaatgctaa aaccatatta gtacagctga aagacgctgt acagattaat
901 tgtacaagac ccagtaacaa tacaagtaaa ggtatacata taggaccagg gagagcattt
961 tatacaacag gaagaataat aggagatata agacaagcac attgtaacat tagtggttta
1021 caatggaata acactttaag acagatagct gaaaaattaa ggaagcaatt taacaatgaa
1081 acaacaatag tctttaaaaa ctcctcagga ggggacccag aaattgtaat gcatagtttt
1141 aattgtgggg gggaattttt ctactgtaat tcaacaaaac tatttaatag tacctgggat
1201 aagaataata ttgaagggtt taataatact ggagggtcaa atgacaccat cacactccaa
1261 tgcagaataa aacaaattat aaacatgtgg cagaaagtag gaaaagcaat gtatgcccct
1321 cccatcagag gacaaattag atgtacatca aatattacag ggctgatatt aacaagagat
1381 ggaggtaata ataacaataa cacccacgag accttcagac caggaggagg aaatatgaag
1441 gataattgga gaagtgaatt atataaatat aaagtagtaa gaattgaacc attaggggta
1501 gcacccacca gggcaaagag gagagtggtg cagagagaaa aaagagcagt aggaatagga
1561 gccttgttcc ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcactgacg
1621 ctgacggtac aggccagaca attattgtct ggtatagtgc aacagcagaa caacttgctg
1681 agggctatag aggcgcaaca gcatctgttg caactcacag tc
//
last modified: Tue May 31 10:56 2022