HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GQ444222		    1146 bp    RNA     linear	VRL 02-OCT-2009
DEFINITION  HIV-1 isolate IS8992_PL_218 from USA envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   GQ444222
VERSION     GQ444222.1 GI:259014336
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1146)
            Show all sequences for reference 1
  AUTHORS   Heath,L., Fox,A., McClure,J., Diem,K., van 't Wout,A.B., Zhao,H.,
	    Park,D.R., Schouten,J.T., Twigg,H.L. I.I.I, Twigg,H.L., Corey,L.,
	    Mullins,J.I. and Mittler,J.E.
  TITLE     Evidence for limited genetic compartmentalization of HIV-1 between
	    lung and blood
  JOURNAL   PLoS ONE 4 (9), E6949 (2009)
  PUBMED    19759830
REFERENCE   2 (bases 1 to 1146)
            Show all sequences for reference 2
  AUTHORS   Heath,L., Fox,A., McClure,J., van't Wout,A.B., Zhao,H., Park,D.R.,
	    Schouten,J.T., Twigg,H.L. I.I.I, Corey,L., Mullins,J.I. and
	    Mittler,J.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2009) Microbiology, University of Washington, Box
	    358070, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..1146
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="IS8992_PL_218"
		     /isolation_source="IS8992 plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="218"
		     /country="USA"
		     /collection_date="24-Aug-2004"
		     /note="subtype: B"
     gene	     <1..>1146
		     /gene="env"
     CDS	     <1..>1146
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACV88523.1"
		     /db_xref="GI:259014337"
		     /translation="KLTPLCVTLNCTDANNATDTNSTWGKMEKGELKNCSFNITTSIR
		     DKVQKEYALFYKLDVVPIDNSTIGNNSDSANYRLISCNTSVITQACPKVSFQPIPIHY
		     CAPAGFAILKCTNKTFNGSGLCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEDIVIRSQ
		     NLSDNAKIIIVQLKEAVNITCARPNNNTRKGIHIGPGGAFYTTGQIIGDIRQAHCNVS
		     KVNWTNTVARVASKLRKLFNNKTIVFKNSSGGDPEIVMHSFNCGGEFFYCNTTQLFNS
		     TWNGTNIWNSTNTWNNTDTLNSTEKYENITLPCRIKQIINMWQEVGKAMYAPPIRGVI
		     QCTSNITGLLLTRDGGNNDTNENETFRPGGGDMRDNWRSELYKYKVVR"
BASE COUNT	443 a	 183 c	  225 g    295 t
ORIGIN
       1 aaattgaccc cactctgtgt tactttaaat tgcactgatg ctaataatgc cactgatact 
      61 aatagtacat ggggaaagat ggagaaagga gaactaaaaa actgctcttt taatatcacc 
     121 acaagcataa gagataaggt gcagaaagaa tatgcacttt tttataaact tgatgtagtt 
     181 ccaatagata atagtacaat aggtaataat agtgatagtg ccaactatag gttgataagt 
     241 tgtaacacct cagtcatcac acaagcctgt ccaaaggtat cctttcagcc aattcccata 
     301 cattattgtg ccccggctgg ttttgcgatt ctaaagtgta ctaataagac attcaatgga 
     361 tcaggactat gtacaaatgt cagcacagtg caatgtacac atggaattaa gccagtagta 
     421 tcaactcaat tactgttaaa tggcagtcta gcagaagaag acatagtaat tagatctcaa 
     481 aatctctcag acaacgctaa aatcataata gtacagctga aggaagcagt aaacattact 
     541 tgtgcaagac ccaacaacaa tacaaggaaa ggtatacata taggaccagg gggggcattc 
     601 tatacaacag gacaaataat aggagatata agacaagcac attgtaatgt tagtaaagta 
     661 aactggacga acactgtagc acgggtagct agcaaattaa gaaaactgtt taataataaa 
     721 acaatagtct ttaagaactc ctcaggaggg gacccagaaa ttgtaatgca cagttttaat 
     781 tgtggagggg aatttttcta ctgtaataca acacaactgt ttaatagtac ttggaatggt 
     841 actaatattt ggaatagtac taatacttgg aataatactg atactttaaa tagtactgaa 
     901 aagtatgaaa atattacact cccatgcaga ataaaacaaa ttataaacat gtggcaggaa 
     961 gtaggaaaag caatgtatgc ccctcccatc agaggagtaa ttcaatgtac atcaaatatt 
    1021 acagggctac tattaacaag agatggtggt aataatgata ctaacgagaa tgagaccttc 
    1081 agacctggag gaggagatat gagggacaat tggagaagtg aattatataa atacaaggta 
    1141 gtaaga
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.