View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS GQ444222 1146 bp RNA linear VRL 02-OCT-2009
DEFINITION HIV-1 isolate IS8992_PL_218 from USA envelope glycoprotein (env)
gene, partial cds
ACCESSION GQ444222
VERSION GQ444222.1 GI:259014336
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1146)
Show all sequences for reference 1
AUTHORS Heath,L., Fox,A., McClure,J., Diem,K., van 't Wout,A.B., Zhao,H.,
Park,D.R., Schouten,J.T., Twigg,H.L. I.I.I, Twigg,H.L., Corey,L.,
Mullins,J.I. and Mittler,J.E.
TITLE Evidence for limited genetic compartmentalization of HIV-1 between
lung and blood
JOURNAL PLoS ONE 4 (9), E6949 (2009)
PUBMED 19759830
REFERENCE 2 (bases 1 to 1146)
Show all sequences for reference 2
AUTHORS Heath,L., Fox,A., McClure,J., van't Wout,A.B., Zhao,H., Park,D.R.,
Schouten,J.T., Twigg,H.L. I.I.I, Corey,L., Mullins,J.I. and
Mittler,J.E.
TITLE Direct Submission
JOURNAL Submitted (04-AUG-2009) Microbiology, University of Washington, Box
358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..1146
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="IS8992_PL_218"
/isolation_source="IS8992 plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="218"
/country="USA"
/collection_date="24-Aug-2004"
/note="subtype: B"
gene <1..>1146
/gene="env"
CDS <1..>1146
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACV88523.1"
/db_xref="GI:259014337"
/translation="KLTPLCVTLNCTDANNATDTNSTWGKMEKGELKNCSFNITTSIR
DKVQKEYALFYKLDVVPIDNSTIGNNSDSANYRLISCNTSVITQACPKVSFQPIPIHY
CAPAGFAILKCTNKTFNGSGLCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEDIVIRSQ
NLSDNAKIIIVQLKEAVNITCARPNNNTRKGIHIGPGGAFYTTGQIIGDIRQAHCNVS
KVNWTNTVARVASKLRKLFNNKTIVFKNSSGGDPEIVMHSFNCGGEFFYCNTTQLFNS
TWNGTNIWNSTNTWNNTDTLNSTEKYENITLPCRIKQIINMWQEVGKAMYAPPIRGVI
QCTSNITGLLLTRDGGNNDTNENETFRPGGGDMRDNWRSELYKYKVVR"
BASE COUNT 443 a 183 c 225 g 295 t
ORIGIN
1 aaattgaccc cactctgtgt tactttaaat tgcactgatg ctaataatgc cactgatact
61 aatagtacat ggggaaagat ggagaaagga gaactaaaaa actgctcttt taatatcacc
121 acaagcataa gagataaggt gcagaaagaa tatgcacttt tttataaact tgatgtagtt
181 ccaatagata atagtacaat aggtaataat agtgatagtg ccaactatag gttgataagt
241 tgtaacacct cagtcatcac acaagcctgt ccaaaggtat cctttcagcc aattcccata
301 cattattgtg ccccggctgg ttttgcgatt ctaaagtgta ctaataagac attcaatgga
361 tcaggactat gtacaaatgt cagcacagtg caatgtacac atggaattaa gccagtagta
421 tcaactcaat tactgttaaa tggcagtcta gcagaagaag acatagtaat tagatctcaa
481 aatctctcag acaacgctaa aatcataata gtacagctga aggaagcagt aaacattact
541 tgtgcaagac ccaacaacaa tacaaggaaa ggtatacata taggaccagg gggggcattc
601 tatacaacag gacaaataat aggagatata agacaagcac attgtaatgt tagtaaagta
661 aactggacga acactgtagc acgggtagct agcaaattaa gaaaactgtt taataataaa
721 acaatagtct ttaagaactc ctcaggaggg gacccagaaa ttgtaatgca cagttttaat
781 tgtggagggg aatttttcta ctgtaataca acacaactgt ttaatagtac ttggaatggt
841 actaatattt ggaatagtac taatacttgg aataatactg atactttaaa tagtactgaa
901 aagtatgaaa atattacact cccatgcaga ataaaacaaa ttataaacat gtggcaggaa
961 gtaggaaaag caatgtatgc ccctcccatc agaggagtaa ttcaatgtac atcaaatatt
1021 acagggctac tattaacaag agatggtggt aataatgata ctaacgagaa tgagaccttc
1081 agacctggag gaggagatat gagggacaat tggagaagtg aattatataa atacaaggta
1141 gtaaga
//
last modified: Tue May 31 10:56 2022