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LOCUS GQ444183 612 bp RNA linear VRL 02-OCT-2009
DEFINITION HIV-1 isolate IS8838_PL_5 from USA envelope glycoprotein (env)
gene, partial cds
ACCESSION GQ444183
VERSION GQ444183.1 GI:259014258
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 612)
Show all sequences for reference 1
AUTHORS Heath,L., Fox,A., McClure,J., Diem,K., van 't Wout,A.B., Zhao,H.,
Park,D.R., Schouten,J.T., Twigg,H.L. I.I.I, Twigg,H.L., Corey,L.,
Mullins,J.I. and Mittler,J.E.
TITLE Evidence for limited genetic compartmentalization of HIV-1 between
lung and blood
JOURNAL PLoS ONE 4 (9), E6949 (2009)
PUBMED 19759830
REFERENCE 2 (bases 1 to 612)
Show all sequences for reference 2
AUTHORS Heath,L., Fox,A., McClure,J., van't Wout,A.B., Zhao,H., Park,D.R.,
Schouten,J.T., Twigg,H.L. I.I.I, Corey,L., Mullins,J.I. and
Mittler,J.E.
TITLE Direct Submission
JOURNAL Submitted (04-AUG-2009) Microbiology, University of Washington, Box
358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..612
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="IS8838_PL_5"
/isolation_source="IS8838 plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="5"
/country="USA"
/collection_date="28-Mar-2002"
/note="subtype: B"
gene <1..>612
/gene="env"
CDS <1..>612
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACV88484.1"
/db_xref="GI:259014259"
/translation="EEEVVIRSANFTDNSKTIIVQLNKSVVINCTRLNNNTRRSITMG
PGKAFYATGEIIGDIRQAHCNISKADWNNTLKRVVEKLRRQFKKEKIIFEQSSGGDPE
IVMHSFNCGGEFFYCNTTQLFNSTWNWNSTWNGTGELNNTENITLPCRIKQIINMWQG
VGRAMYAPPIKGLIRCSSNITGLLLTRDGGHNTSSNDTEIFRPG"
BASE COUNT 246 a 88 c 125 g 153 t
ORIGIN
1 gaagaagagg tagtaattag atctgccaat ttcacagaca atagtaaaac cataatagta
61 cagctgaata aatctgtagt aattaattgt acaaggctca acaacaatac aagaaggagt
121 ataactatgg gaccaggaaa agcattttat gcaacaggag aaataatagg agatataaga
181 caagcacatt gtaacattag taaagcagac tggaataaca ctttaaaacg ggtagttgaa
241 aaattaagaa gacaatttaa gaaagaaaaa ataatctttg agcaatcctc aggaggggac
301 ccagaaattg taatgcacag ttttaattgt ggaggggaat ttttctactg taatacaaca
361 cagctgttta atagtacttg gaattggaat agtacttgga atggtactgg agagttaaat
421 aacactgaaa atatcacact cccatgcaga ataaaacaaa ttataaacat gtggcagggg
481 gtaggaagag caatgtatgc ccctcccatc aaaggactaa ttagatgttc atcaaatatt
541 acagggctac tattaacaag agatggtggt cataatacta gttctaatga tactgagatc
601 ttcagacctg ga
//
last modified: Tue May 31 10:56 2022