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LOCUS GQ444150 594 bp RNA linear VRL 02-OCT-2009
DEFINITION HIV-1 isolate IS8247_PL_FB2 from USA envelope glycoprotein (env)
gene, partial cds
ACCESSION GQ444150
VERSION GQ444150.1 GI:259014192
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 594)
Show all sequences for reference 1
AUTHORS Heath,L., Fox,A., McClure,J., Diem,K., van 't Wout,A.B., Zhao,H.,
Park,D.R., Schouten,J.T., Twigg,H.L. I.I.I, Twigg,H.L., Corey,L.,
Mullins,J.I. and Mittler,J.E.
TITLE Evidence for limited genetic compartmentalization of HIV-1 between
lung and blood
JOURNAL PLoS ONE 4 (9), E6949 (2009)
PUBMED 19759830
REFERENCE 2 (bases 1 to 594)
Show all sequences for reference 2
AUTHORS Heath,L., Fox,A., McClure,J., van't Wout,A.B., Zhao,H., Park,D.R.,
Schouten,J.T., Twigg,H.L. I.I.I, Corey,L., Mullins,J.I. and
Mittler,J.E.
TITLE Direct Submission
JOURNAL Submitted (04-AUG-2009) Microbiology, University of Washington, Box
358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..594
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="IS8247_PL_FB2"
/isolation_source="IS8247 plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="FB2"
/country="USA"
/collection_date="30-Oct-2002"
/note="subtype: B"
gene <1..>594
/gene="env"
CDS <1..>594
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACV88451.1"
/db_xref="GI:259014193"
/translation="KEDVVIRSDNFTDNAKIIIVQLNETVKINCTRPSNNTRKGIHMG
PGSTLYATGAIIGDIRQAHCNISGVAWNRTLSLIAKKLKEQFNTTTIAFNRSSGGDPE
IVTHSFNCGGEFFYCNTTQLFNTTWNETKGPGYNNETIILPCRIKQIINMWQEVGKAM
YAPPISGQINCSSNITGLILTRDGGNNQSNTTETFRPG"
BASE COUNT 243 a 102 c 113 g 136 t
ORIGIN
1 aaagaagatg tagtaattag gtctgacaac ttcacagaca atgctaaaat cataatagta
61 cagctgaacg aaactgtaaa aattaattgt acaagaccca gcaataatac aagaaaaggt
121 atacatatgg gaccagggag cacattatat gcaacaggag caataatagg agatataaga
181 caagcacatt gtaacattag tggagtagca tggaatagaa ctttaagtct gatagctaaa
241 aaattaaaag agcaatttaa taccacaaca atagccttta accgatcctc aggaggggac
301 ccagaaattg taacacacag ttttaattgt ggaggggaat ttttctactg taatacaaca
361 caactgttta atactacttg gaatgagact aaagggccag gatacaataa cgaaactatc
421 atactcccat gcagaataaa acaaattata aacatgtggc aggaagtagg aaaagcaatg
481 tatgcccctc ccatcagtgg acaaattaac tgttcatcaa atattacagg gctgatatta
541 acaagagatg gtggtaataa ccagagtaat accaccgaaa ccttcagacc tgga
//
last modified: Tue May 31 10:56 2022