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LOCUS GQ443580 1015 bp RNA linear VRL 22-SEP-2009
DEFINITION HIV-1 strain CNsd06134 from China pol protein (pol) gene, partial
cds
ACCESSION GQ443580
VERSION GQ443580.1 GI:258618366
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1015)
Show all sequences for reference 1
AUTHORS Zhang,J., Kang,D., Fu,J., Sun,X., Lin,B., Bi,Z., Nkengasong,J.N.
and Yang,C.
TITLE Surveillance of transmitted HIV type 1 drug resistance in newly
diagnosed hiv type 1-infected patients in Shandong Province, China.
JOURNAL AIDS Res. Hum. Retroviruses. 26(1); 99-103 (2010)
PUBMED 20121622
REFERENCE 2 (bases 1 to 1015)
Show all sequences for reference 2
AUTHORS Zhang,J., Kang,D., Fu,J., Sun,X., Lin,B., Bi,Z., Nkengasong,J. and
Yang,C.
TITLE Direct Submission
JOURNAL Submitted (03-AUG-2009) International Lab Branch, Division of
Global AIDS, NCHHSTP, Centers for Disease Control and Prevention,
1600 Clifton Road, Mail Stop A-11, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..1015
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/strain="CNsd06134"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China: Shandong"
/collection_date="2006"
/note="group: M"
gene <1..>1015
/gene="pol"
CDS <1..>1015
/gene="pol"
/note="contains protease and reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACV83978.1"
/db_xref="GI:258618367"
/translation="IKIGGQLKEALLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKV
RQYDQIXIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIDTVPVTLKPG
MDGPKVKQWPLTEEKIKALTEICXEMEEEGKISKIGPENPYNTPVFAIKKKDXTKWRK
LVDFRELNKRTQDFWEVQLGIPHPAGLKXKKSVTVLDVGDAYFSVPLDESFRKYTAFT
IPSRNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPEMXIYQYMDDLYV
GSDLEIGQHRTKIDELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDRWTVQPIELP
EKDS"
BASE COUNT 394 a 156 c 221 g 238 t 6 other
ORIGIN
1 ataaaaatag gagggcagct gaaagaagct ctattagata caggagcaga tgatacagta
61 ttagaagata taaatttgcc aggaaaatgg aaaccaaaaa tgataggggg aattggaggt
121 tttatcaaag taaggcaata tgatcagata sttatagaaa tttgtggaaa aaaggctata
181 ggtacagtgt tagtaggacc tacacctgtc aacataattg gacgraatat gttgactcag
241 attggttgta ctttaaattt tccaattagt cctattgaca ctgtaccagt aacattaaag
301 ccaggaatgg atggaccaaa ggttaaacag tggccattga cagaagaaaa aataaaagca
361 ttaacagaaa tttgtargga aatggaagag gaaggaaaaa tttcaaaaat tgggcctgaa
421 aatccatata atactccagt atttgctata aagaaaaagg acrgcaccaa atggaggaaa
481 ttagtagatt tcagagagct caataaaaga actcaggact tttgggaagt acaattagga
541 ataccgcatc cagcaggatt aaaaargaaa aaatcagtga cagtactaga tgtgggtgat
601 gcatattttt cagtcccttt agatgaaagc tttagaaagt atactgcatt caccatacct
661 agtagaaaca atgagacacc aggaatcaga tatcagtaca atgtgctacc acagggatgg
721 aaaggatctc cggcaatatt ccagtgtagc atgacaaaaa tcttagagcc ctttagaaaa
781 caaaatccag agatggwtat ctatcaatac atggatgact tgtatgtagg atctgattta
841 gaaatagggc agcacagaac aaaaatagat gagctaagag ctcatctatt gagctgggga
901 tttactacac cagacaaaaa gcatcagaag gaaccgccat ttctttggat gggatatgaa
961 ctccatccgg acagatggac agtccagcct atagaactgc cagaaaaaga cagct
//
last modified: Tue May 31 10:56 2022