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LOCUS	    GQ428819		     641 bp    RNA     linear	VRL 15-SEP-2009
DEFINITION  HIV-1 isolate PACT1059_subject 11_wk_40_RT7 from USA pol protein
	    (pol) gene, partial cds
ACCESSION   GQ428819
VERSION     GQ428819.1 GI:257785685
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 641)
            Show all sequences for reference 1
  AUTHORS   Shiu,C., Cunningham,C.K., Greenough,T., Muresan,P.,
	    Sanchez-Merino,V., Carey,V., Jackson,J.B., Ziemniak,C., Fox,L.,
	    Belzer,M., Ray,S.C., Luzuriaga,K. and Persaud,D.
  CONSRTM   Pediatric AIDS Clinical Trials Group P1059 Team
  TITLE     Identification of ongoing human immunodeficiency virus type 1
	    (HIV-1) replication in residual viremia during recombinant HIV-1
	    poxvirus immunizations in patients with clinically undetectable
	    viral loads on durable suppressive highly active antiretroviral
	    therapy
  JOURNAL   J. Virol. 83 (19), 9731-9742 (2009)
  PUBMED    19605490
REFERENCE   2 (bases 1 to 641)
            Show all sequences for reference 2
  AUTHORS   Shiu,C., Cunningham,C.K., Greenough,T., Muresan,P.,
	    Sanchez-Merino,V., Carey,V., Jackson,J.B., Ziemniak,C., Fox,L.,
	    Belzer,M., Ray,S.C., Luzuriaga,K. and Persaud,D.
  CONSRTM   Pediatric AIDS Clinical Trials Group P1059 Team
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2009) Pediatrics, Johns Hopkins University School
	    of Medicine, 200 N. Wolfe Street, Room 3151, Baltimore, MD 21287,
	    USA
FEATURES             Location/Qualifiers
     source	     1..641
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="PACT1059_subject 11_wk_40_RT7"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2007"
		     /note="subtype: B"
     gene	     <1..>641
		     /gene="pol"
     CDS	     <1..>641
		     /gene="pol"
		     /note="polymerase; RT region"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACV66572.1"
		     /db_xref="GI:257785686"
		     /translation="VKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIK
		     KKGGTRWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTILDVGDAYFSVPLHE
		     DFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQFSMTKILEPFRNQNPEIVI
		     YQYMDDLYVGSDLEIGQHRTKIEEMRQHLLRWGFITPDEKHQKEPPFLWMGYE"
BASE COUNT	263 a	 100 c	  127 g    151 t
ORIGIN
       1 aagttaaaca atggccatta acagaagaaa aaataaaagc attagtagaa atttgtacag 
      61 aaatggaaaa ggaagggaaa atttcaaaaa ttgggcctga aaatccatac aatactccaa 
     121 tatttgccat aaaaaagaaa gggggtacta gatggagaaa attagtagat ttcagagaac 
     181 ttaataagag aactcaggac ttctgggaaa ttcaactagg aataccacat cccgcagggt 
     241 taaaaaagaa aaaatcagta acaatactgg atgtgggtga tgcatacttt tcagttccct 
     301 tacatgaaga ctttaggaaa tatactgcat ttaccatacc tagtataaac aatgagacac 
     361 cagggattag atatcagtac aatgtgcttc cacagggatg gaaggggtca ccagcaatat 
     421 ttcaatttag catgacaaaa atattagaac cttttagaaa ccaaaaccca gaaatagtta 
     481 tctatcaata catggatgac ttatatgtag gatctgactt agaaataggg cagcatagaa 
     541 caaaaataga ggaaatgaga caacatctgt tgaggtgggg atttatcaca ccagacgaaa 
     601 aacatcagaa agaacctcca ttcctctgga tgggttatga a
//
last modified: Tue May 31 10:56 2022


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