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LOCUS GQ428819 641 bp RNA linear VRL 15-SEP-2009
DEFINITION HIV-1 isolate PACT1059_subject 11_wk_40_RT7 from USA pol protein
(pol) gene, partial cds
ACCESSION GQ428819
VERSION GQ428819.1 GI:257785685
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 641)
Show all sequences for reference 1
AUTHORS Shiu,C., Cunningham,C.K., Greenough,T., Muresan,P.,
Sanchez-Merino,V., Carey,V., Jackson,J.B., Ziemniak,C., Fox,L.,
Belzer,M., Ray,S.C., Luzuriaga,K. and Persaud,D.
CONSRTM Pediatric AIDS Clinical Trials Group P1059 Team
TITLE Identification of ongoing human immunodeficiency virus type 1
(HIV-1) replication in residual viremia during recombinant HIV-1
poxvirus immunizations in patients with clinically undetectable
viral loads on durable suppressive highly active antiretroviral
therapy
JOURNAL J. Virol. 83 (19), 9731-9742 (2009)
PUBMED 19605490
REFERENCE 2 (bases 1 to 641)
Show all sequences for reference 2
AUTHORS Shiu,C., Cunningham,C.K., Greenough,T., Muresan,P.,
Sanchez-Merino,V., Carey,V., Jackson,J.B., Ziemniak,C., Fox,L.,
Belzer,M., Ray,S.C., Luzuriaga,K. and Persaud,D.
CONSRTM Pediatric AIDS Clinical Trials Group P1059 Team
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2009) Pediatrics, Johns Hopkins University School
of Medicine, 200 N. Wolfe Street, Room 3151, Baltimore, MD 21287,
USA
FEATURES Location/Qualifiers
source 1..641
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="PACT1059_subject 11_wk_40_RT7"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2007"
/note="subtype: B"
gene <1..>641
/gene="pol"
CDS <1..>641
/gene="pol"
/note="polymerase; RT region"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="ACV66572.1"
/db_xref="GI:257785686"
/translation="VKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIK
KKGGTRWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTILDVGDAYFSVPLHE
DFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQFSMTKILEPFRNQNPEIVI
YQYMDDLYVGSDLEIGQHRTKIEEMRQHLLRWGFITPDEKHQKEPPFLWMGYE"
BASE COUNT 263 a 100 c 127 g 151 t
ORIGIN
1 aagttaaaca atggccatta acagaagaaa aaataaaagc attagtagaa atttgtacag
61 aaatggaaaa ggaagggaaa atttcaaaaa ttgggcctga aaatccatac aatactccaa
121 tatttgccat aaaaaagaaa gggggtacta gatggagaaa attagtagat ttcagagaac
181 ttaataagag aactcaggac ttctgggaaa ttcaactagg aataccacat cccgcagggt
241 taaaaaagaa aaaatcagta acaatactgg atgtgggtga tgcatacttt tcagttccct
301 tacatgaaga ctttaggaaa tatactgcat ttaccatacc tagtataaac aatgagacac
361 cagggattag atatcagtac aatgtgcttc cacagggatg gaaggggtca ccagcaatat
421 ttcaatttag catgacaaaa atattagaac cttttagaaa ccaaaaccca gaaatagtta
481 tctatcaata catggatgac ttatatgtag gatctgactt agaaataggg cagcatagaa
541 caaaaataga ggaaatgaga caacatctgt tgaggtgggg atttatcaca ccagacgaaa
601 aacatcagaa agaacctcca ttcctctgga tgggttatga a
//
last modified: Tue May 31 10:56 2022