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LOCUS	    GQ398949		    1046 bp    DNA     linear	VRL 29-SEP-2009
DEFINITION  HIV-1 isolate 087373569414376 from Italy pol protein (pol) gene,
	    partial cds
ACCESSION   GQ398949
VERSION     GQ398949.1 GI:259377870
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1046)
            Show all sequences for reference 1
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Transmission of drug-resistant HIV-1 is stabilizing in Europe.
  JOURNAL   J. Infect. Dis.. 200(10); 1503-8 (2009)
  PUBMED    19835478
REFERENCE   2 (bases 1 to 1046)
            Show all sequences for reference 2
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) Rega Institute for Medical Research and
	    University Hospitals, Katholieke Universiteit Leuven, Leuven,
	    Belgium
FEATURES             Location/Qualifiers
     source	     1..1046
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="reFzcbds70EZvnS"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Italy"
		     /collection_date="2004"
		     /collected_by="Prof. Dr. C. Balotta"
     gene	     <1..>1046
		     /gene="pol"
     CDS	     <1..>1046
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACW57185.1"
		     /db_xref="GI:259377871"
		     /translation="PQITLWQRPLVTVRIGGQPIEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALKXICTEMEKEXKISKIGPDNPYNTPVF
		     AIKKKDXTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKNFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHFLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIMLPDK"
     misc_feature    31..273
		     /gene="pol"
		     /note="Retropepsins, pepsin-like aspartate proteases;
		     Region: HIV_retropepsin_like; cd05482"
		     /db_xref="CDD:133149"
     misc_feature    order(73..75,79..81,85..87,136..144,250..252)
		     /gene="pol"
		     /note="inhibitor binding site; inhibition site"
		     /db_xref="CDD:133149"
     misc_feature    73..81
		     /gene="pol"
		     /note="catalytic motif; other site"
		     /db_xref="CDD:133149"
     misc_feature    73..75
		     /gene="pol"
		     /note="Catalytic residue; other site"
		     /db_xref="CDD:133149"
     misc_feature    order(136..150,154..168)
		     /gene="pol"
		     /note="Active site flap; active site"
		     /db_xref="CDD:133149"
     misc_feature    349..999
		     /gene="pol"
		     /note="RT_like: Reverse transcriptase (RT, RNA-dependent
		     DNA polymerase)_like family. An RT gene is usually
		     indicative of a mobile element such as a retrotransposon
		     or retrovirus. RTs occur in a variety of mobile elements,
		     including retrotransposons...; Region: RT_like; cl02808"
		     /db_xref="CDD:141703"
     misc_feature    457..999
		     /gene="pol"
		     /note="Reverse transcriptase (RNA-dependent DNA
		     polymerase); Region: RVT_1; pfam00078"
		     /db_xref="CDD:109146"
     misc_feature    order(625..642,748..753,844..846,850..855,985..990)
		     /gene="pol"
		     /note="active site"
		     /db_xref="CDD:73150"
     misc_feature    order(625..642,748..750,850..852)
		     /gene="pol"
		     /note="NTP binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    751..753
		     /gene="pol"
		     /note="nucleic acid binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    <1..297
		     /gene="pol"
		     /note="protease"
     misc_feature    298..>1046
		     /gene="pol"
		     /note="reverse transcriptase"
BASE COUNT	416 a	 170 c	  207 g    247 t      6 other
ORIGIN
       1 cctcaaatca ctctttggca gcgaccctta gtcacagtaa gaataggggg acagccaata 
      61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa tttaccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acaatatgat 
     181 cagatactca tagaaatttg tggaaaaaag gccataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgaaaccgt gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaatw aaagcattaa aagamatttg tacagaratg 
     421 gaaaaggaag raaaaatttc aaaaattggg cctgacaatc catacaatac tccagtrttt 
     481 gccataaaga aaaaagatrg tactaaatgg agaaaattag tagatttcag agaactcaat 
     541 aagagaactc aagacttctg ggaggtccaa ttaggaatac ctcatcccgc aggattaaaa 
     601 aagaaaaaat cagtaacagt actagatgta ggggatgcat atttttcagt tcccttagat 
     661 aaaaacttta gaaagtatac tgcattcact atacctagtg taaataatga gacaccagga 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag 
     781 gcaagtatga caaaaatctt agagcccttt agaacaaaaa atccagaaat agtgatctac 
     841 caatatatgg atgatttata tgtaggatct gacttagaga tagggcagca tagagcaaaa 
     901 atagaggagt taagagaaca tttcctgaaa tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagcctataa tgctgccaga taaaga
//
last modified: Tue May 31 10:56 2022


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