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LOCUS GQ398932 1302 bp DNA linear VRL 29-SEP-2009
DEFINITION HIV-1 isolate 076294695797706 from Italy pol protein (pol) gene,
partial cds
ACCESSION GQ398932
VERSION GQ398932.1 GI:259377837
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Transmission of drug-resistant HIV-1 is stabilizing in Europe.
JOURNAL J. Infect. Dis.. 200(10); 1503-8 (2009)
PUBMED 19835478
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2009) Rega Institute for Medical Research and
University Hospitals, Katholieke Universiteit Leuven, Leuven,
Belgium
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="ptScGrTB44a58Rx"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Italy"
/collection_date="2005"
/collected_by="Prof. Dr. C. Balotta"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACW57169.1"
/db_xref="GI:259377838"
/translation="PQITLWQRPVVTXQVGGQLREALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVKQYDNILIHICGQKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSVNNETPGMRYQYNVLPQGWKGSPAIFQCSMTKILDPFRAKNPD
LIIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDXV
PLTTEAELELAENREILKEPVHGAYYDPSKDLIAELQKQGQG"
misc_feature 31..273
/gene="pol"
/note="Retropepsins, pepsin-like aspartate proteases;
Region: HIV_retropepsin_like; cd05482"
/db_xref="CDD:133149"
misc_feature order(73..75,79..81,85..87,136..144,250..252)
/gene="pol"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:133149"
misc_feature 73..81
/gene="pol"
/note="catalytic motif; other site"
/db_xref="CDD:133149"
misc_feature 73..75
/gene="pol"
/note="Catalytic residue; other site"
/db_xref="CDD:133149"
misc_feature order(136..150,154..168)
/gene="pol"
/note="Active site flap; active site"
/db_xref="CDD:133149"
misc_feature 349..999
/gene="pol"
/note="RT_like: Reverse transcriptase (RT, RNA-dependent
DNA polymerase)_like family. An RT gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. RTs occur in a variety of mobile elements,
including retrotransposons...; Region: RT_like; cl02808"
/db_xref="CDD:141703"
misc_feature 457..999
/gene="pol"
/note="Reverse transcriptase (RNA-dependent DNA
polymerase); Region: RVT_1; pfam00078"
/db_xref="CDD:109146"
misc_feature order(625..642,748..753,844..846,850..855,985..990)
/gene="pol"
/note="active site"
/db_xref="CDD:73150"
misc_feature order(625..642,748..750,850..852)
/gene="pol"
/note="NTP binding site; other site"
/db_xref="CDD:73150"
misc_feature 751..753
/gene="pol"
/note="nucleic acid binding site; other site"
/db_xref="CDD:73150"
misc_feature 1009..1179
/gene="pol"
/note="Reverse transcriptase thumb domain; Region:
RVT_thumb; pfam06817"
/db_xref="CDD:115473"
misc_feature <1..297
/gene="pol"
/note="protease"
misc_feature 298..>1302
/gene="pol"
/note="reverse transcriptase"
BASE COUNT 507 a 212 c 276 g 298 t 9 other
ORIGIN
1 cctcaaatca ctctttggca acgaccagta gtcacartac aagtaggggg acagctaagg
61 gaagctctat tagatacagg agcagatgat acagtattag aagayataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat
181 aacatactca tacacatttg tggacaaaag gctataggta cagtgttggt aggacctact
241 cctgtcaaca taattggaag aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatatg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag rgaacttaat
541 aaaagaactc aagatttttg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaagt cagtaacagt actggatgtg ggggatgcat atttttcagt tcccttagat
661 aaggatttca ggaagtacac tgcattcacc atacctagtg tcaacaatga gacaccagga
721 atgaggtatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa
781 tgtagcatga caaaaatytt agatccyttc agagcaaaaa atccagactt aattatctac
841 caatacatgg atgatctgta tgtagggtct gacttagaaa tagggcagca tagagcaaaa
901 atagaggagt taagagcaca tctactgaaa tggggattta ctacaccaga caaraaacat
961 caaaaggaac ccccattcct ttggatgggg tatgaactcc atcctgataa atggacagtg
1021 cagcctatac aattgccaga caaggacagc tggactgtca atgatataca gaagttagta
1081 ggaaaactaa attgggcaag tcagatttat ccaggratta aagtaaagca attatgtaar
1141 ctccttaggg gagccaaggc actaacagac ayagtgccac tgactacaga agcagagtta
1201 gaattggcag aaaataggga aattctaaaa gaaccagtac atggggcata ttatgaccca
1261 tcaaaagact taatagcaga actacagaaa caaggacaag gg
//
last modified: Tue May 31 10:56 2022