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LOCUS	    GQ398932		    1302 bp    DNA     linear	VRL 29-SEP-2009
DEFINITION  HIV-1 isolate 076294695797706 from Italy pol protein (pol) gene,
	    partial cds
ACCESSION   GQ398932
VERSION     GQ398932.1 GI:259377837
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Transmission of drug-resistant HIV-1 is stabilizing in Europe.
  JOURNAL   J. Infect. Dis.. 200(10); 1503-8 (2009)
  PUBMED    19835478
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) Rega Institute for Medical Research and
	    University Hospitals, Katholieke Universiteit Leuven, Leuven,
	    Belgium
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="ptScGrTB44a58Rx"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Italy"
		     /collection_date="2005"
		     /collected_by="Prof. Dr. C. Balotta"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACW57169.1"
		     /db_xref="GI:259377838"
		     /translation="PQITLWQRPVVTXQVGGQLREALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVKQYDNILIHICGQKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGMRYQYNVLPQGWKGSPAIFQCSMTKILDPFRAKNPD
		     LIIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDXV
		     PLTTEAELELAENREILKEPVHGAYYDPSKDLIAELQKQGQG"
     misc_feature    31..273
		     /gene="pol"
		     /note="Retropepsins, pepsin-like aspartate proteases;
		     Region: HIV_retropepsin_like; cd05482"
		     /db_xref="CDD:133149"
     misc_feature    order(73..75,79..81,85..87,136..144,250..252)
		     /gene="pol"
		     /note="inhibitor binding site; inhibition site"
		     /db_xref="CDD:133149"
     misc_feature    73..81
		     /gene="pol"
		     /note="catalytic motif; other site"
		     /db_xref="CDD:133149"
     misc_feature    73..75
		     /gene="pol"
		     /note="Catalytic residue; other site"
		     /db_xref="CDD:133149"
     misc_feature    order(136..150,154..168)
		     /gene="pol"
		     /note="Active site flap; active site"
		     /db_xref="CDD:133149"
     misc_feature    349..999
		     /gene="pol"
		     /note="RT_like: Reverse transcriptase (RT, RNA-dependent
		     DNA polymerase)_like family. An RT gene is usually
		     indicative of a mobile element such as a retrotransposon
		     or retrovirus. RTs occur in a variety of mobile elements,
		     including retrotransposons...; Region: RT_like; cl02808"
		     /db_xref="CDD:141703"
     misc_feature    457..999
		     /gene="pol"
		     /note="Reverse transcriptase (RNA-dependent DNA
		     polymerase); Region: RVT_1; pfam00078"
		     /db_xref="CDD:109146"
     misc_feature    order(625..642,748..753,844..846,850..855,985..990)
		     /gene="pol"
		     /note="active site"
		     /db_xref="CDD:73150"
     misc_feature    order(625..642,748..750,850..852)
		     /gene="pol"
		     /note="NTP binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    751..753
		     /gene="pol"
		     /note="nucleic acid binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    1009..1179
		     /gene="pol"
		     /note="Reverse transcriptase thumb domain; Region:
		     RVT_thumb; pfam06817"
		     /db_xref="CDD:115473"
     misc_feature    <1..297
		     /gene="pol"
		     /note="protease"
     misc_feature    298..>1302
		     /gene="pol"
		     /note="reverse transcriptase"
BASE COUNT	507 a	 212 c	  276 g    298 t      9 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccagta gtcacartac aagtaggggg acagctaagg 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagayataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 aacatactca tacacatttg tggacaaaag gctataggta cagtgttggt aggacctact 
     241 cctgtcaaca taattggaag aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatatg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag rgaacttaat 
     541 aaaagaactc aagatttttg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaagt cagtaacagt actggatgtg ggggatgcat atttttcagt tcccttagat 
     661 aaggatttca ggaagtacac tgcattcacc atacctagtg tcaacaatga gacaccagga 
     721 atgaggtatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa 
     781 tgtagcatga caaaaatytt agatccyttc agagcaaaaa atccagactt aattatctac 
     841 caatacatgg atgatctgta tgtagggtct gacttagaaa tagggcagca tagagcaaaa 
     901 atagaggagt taagagcaca tctactgaaa tggggattta ctacaccaga caaraaacat 
     961 caaaaggaac ccccattcct ttggatgggg tatgaactcc atcctgataa atggacagtg 
    1021 cagcctatac aattgccaga caaggacagc tggactgtca atgatataca gaagttagta 
    1081 ggaaaactaa attgggcaag tcagatttat ccaggratta aagtaaagca attatgtaar 
    1141 ctccttaggg gagccaaggc actaacagac ayagtgccac tgactacaga agcagagtta 
    1201 gaattggcag aaaataggga aattctaaaa gaaccagtac atggggcata ttatgaccca 
    1261 tcaaaagact taatagcaga actacagaaa caaggacaag gg
//
last modified: Tue May 31 10:56 2022


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