HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GQ398867		    1302 bp    DNA     linear	VRL 29-SEP-2009
DEFINITION  HIV-1 isolate 027179362955982 from Italy pol protein (pol) gene,
	    partial cds
ACCESSION   GQ398867
VERSION     GQ398867.1 GI:259377715
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Transmission of drug-resistant HIV-1 is stabilizing in Europe.
  JOURNAL   J. Infect. Dis.. 200(10); 1503-8 (2009)
  PUBMED    19835478
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) Rega Institute for Medical Research and
	    University Hospitals, Katholieke Universiteit Leuven, Leuven,
	    Belgium
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="kNnkXDpv7czBjbl"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Italy"
		     /collection_date="2005"
		     /collected_by="Prof. Dr. C. Balotta"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACW57112.1"
		     /db_xref="GI:259377716"
		     /translation="PQITLWQRPFVIVKIGGQLKEALLDTGADDTVVEEINLPGRWKP
		     KMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDXDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVI
		     PLTEEAELELAENREILREPVHGVYYDPSKDLIAEIQKQGHG"
     misc_feature    37..273
		     /gene="pol"
		     /note="Retropepsins, pepsin-like aspartate proteases;
		     Region: HIV_retropepsin_like; cd05482"
		     /db_xref="CDD:133149"
     misc_feature    order(73..75,79..81,85..87,136..144,250..252)
		     /gene="pol"
		     /note="inhibitor binding site; inhibition site"
		     /db_xref="CDD:133149"
     misc_feature    73..81
		     /gene="pol"
		     /note="catalytic motif; other site"
		     /db_xref="CDD:133149"
     misc_feature    73..75
		     /gene="pol"
		     /note="Catalytic residue; other site"
		     /db_xref="CDD:133149"
     misc_feature    order(136..150,154..168)
		     /gene="pol"
		     /note="Active site flap; active site"
		     /db_xref="CDD:133149"
     misc_feature    349..999
		     /gene="pol"
		     /note="RT_like: Reverse transcriptase (RT, RNA-dependent
		     DNA polymerase)_like family. An RT gene is usually
		     indicative of a mobile element such as a retrotransposon
		     or retrovirus. RTs occur in a variety of mobile elements,
		     including retrotransposons...; Region: RT_like; cl02808"
		     /db_xref="CDD:141703"
     misc_feature    457..999
		     /gene="pol"
		     /note="Reverse transcriptase (RNA-dependent DNA
		     polymerase); Region: RVT_1; pfam00078"
		     /db_xref="CDD:109146"
     misc_feature    order(625..642,748..753,844..846,850..855,985..990)
		     /gene="pol"
		     /note="active site"
		     /db_xref="CDD:73150"
     misc_feature    order(625..642,748..750,850..852)
		     /gene="pol"
		     /note="NTP binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    751..753
		     /gene="pol"
		     /note="nucleic acid binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    1009..1179
		     /gene="pol"
		     /note="Reverse transcriptase thumb domain; Region:
		     RVT_thumb; pfam06817"
		     /db_xref="CDD:115473"
     misc_feature    <1..297
		     /gene="pol"
		     /note="protease"
     misc_feature    298..>1302
		     /gene="pol"
		     /note="reverse transcriptase"
BASE COUNT	508 a	 212 c	  284 g    297 t      1 other
ORIGIN
       1 cctcagatca ctctttggca acgacccttc gtcatagtaa aaataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtagtag aagaaataaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caggtaccca tagaaatctg tggacataag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttcct 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaacc catacaatac tccagtattt 
     481 gctataaaga aaaaagacag taccaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aggatttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 raagacttca ggaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaaat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttgagg tggggattta ctacaccaga caaaaagcat 
     961 cagaaagaac ccccattcct ttggatgggt tatgaactcc atcctgataa atggacagtg 
    1021 cagcctatag tgctgccaga gaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttac gcagggatta aagtaaagca attatgtaaa 
    1141 ctccttaggg gagccaaagc actaacagaa gtaataccac taacagaaga agcagagcta 
    1201 gaactggcag aaaacaggga gattctaaga gaaccagtac atggagtgta ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaaa caggggcatg gc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.