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LOCUS GQ398842 1279 bp DNA linear VRL 29-SEP-2009
DEFINITION HIV-1 isolate 012964222278363 from Netherlands pol protein (pol)
gene, partial cds
ACCESSION GQ398842
VERSION GQ398842.1 GI:259377668
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1279)
Show all sequences for reference 1
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Transmission of drug-resistant HIV-1 is stabilizing in Europe.
JOURNAL J. Infect. Dis.. 200(10); 1503-8 (2009)
PUBMED 19835478
REFERENCE 2 (bases 1 to 1279)
Show all sequences for reference 2
AUTHORS Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
CONSRTM SPREAD / EuropeHIVResistance
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2009) Rega Institute for Medical Research and
University Hospitals, Katholieke Universiteit Leuven, Leuven,
Belgium
FEATURES Location/Qualifiers
source 1..1279
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="hUXqGko9zlsJVr6"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Netherlands"
/collection_date="2003"
/collected_by="C.A.B. Boucher, Professor MD, PhD;
A.M.J.Wensing, MD, PhD"
gene <1..>1279
/gene="pol"
CDS <1..>1279
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACW57090.1"
/db_xref="GI:259377669"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVKQYDQIXIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPIS
PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKVGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKBFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYIGSDLEIGQHRAKIEELREHLLRWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIMLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGXKALTEVV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIA"
misc_feature 31..273
/gene="pol"
/note="Retropepsins, pepsin-like aspartate proteases;
Region: HIV_retropepsin_like; cd05482"
/db_xref="CDD:133149"
misc_feature order(73..75,79..81,85..87,136..144,250..252)
/gene="pol"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:133149"
misc_feature 73..81
/gene="pol"
/note="catalytic motif; other site"
/db_xref="CDD:133149"
misc_feature 73..75
/gene="pol"
/note="Catalytic residue; other site"
/db_xref="CDD:133149"
misc_feature order(136..150,154..168)
/gene="pol"
/note="Active site flap; active site"
/db_xref="CDD:133149"
misc_feature 349..999
/gene="pol"
/note="RT_like: Reverse transcriptase (RT, RNA-dependent
DNA polymerase)_like family. An RT gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. RTs occur in a variety of mobile elements,
including retrotransposons...; Region: RT_like; cl02808"
/db_xref="CDD:141703"
misc_feature 457..999
/gene="pol"
/note="Reverse transcriptase (RNA-dependent DNA
polymerase); Region: RVT_1; pfam00078"
/db_xref="CDD:109146"
misc_feature order(625..642,748..753,844..846,850..855,985..990)
/gene="pol"
/note="active site"
/db_xref="CDD:73150"
misc_feature order(625..642,748..750,850..852)
/gene="pol"
/note="NTP binding site; other site"
/db_xref="CDD:73150"
misc_feature 751..753
/gene="pol"
/note="nucleic acid binding site; other site"
/db_xref="CDD:73150"
misc_feature 1009..>1161
/gene="pol"
/note="Reverse transcriptase thumb domain; Region:
RVT_thumb; pfam06817"
/db_xref="CDD:115473"
misc_feature <1..297
/gene="pol"
/note="protease"
misc_feature 298..>1279
/gene="pol"
/note="reverse transcriptase"
BASE COUNT 501 a 205 c 272 g 297 t 4 other
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtcacaataa agataggagg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat
181 cagatacyca tagagatttg cggacataaa gctataggta cagtgttaat aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgtacttt aaattttccc
301 attagtccta ttgacactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt
361 aaacaatggc cattgacaga ggaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaagatttc aaaagttggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagactttag agaacttaat
541 aaaagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaaracttca gaaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attaggtatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatttt agagcctttt agaaaacaaa atccagacat agttatatat
841 caatacatgg atgatttgta tataggatca gacttagaaa tagggcagca tagagcaaaa
901 atagaggaac tgagagaaca tctgttaagg tggggactta ccacaccaga caaaaaacat
961 cagaaagaac ctcccttcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctataa tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaagca attatgtaaa
1141 ctccttaggg gamccaaagc rctaacagaa gtagtaccac taacagaaga agcagagtta
1201 gaactggcag aaaacaggga gattctaaaa gaaccagtac atggggtgta ttatgaccca
1261 tcaaaagact taatagcag
//
last modified: Tue May 31 10:56 2022