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LOCUS	    GQ398842		    1279 bp    DNA     linear	VRL 29-SEP-2009
DEFINITION  HIV-1 isolate 012964222278363 from Netherlands pol protein (pol)
	    gene, partial cds
ACCESSION   GQ398842
VERSION     GQ398842.1 GI:259377668
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1279)
            Show all sequences for reference 1
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kucherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R.J., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stockl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Sonnerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.B.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Transmission of drug-resistant HIV-1 is stabilizing in Europe.
  JOURNAL   J. Infect. Dis.. 200(10); 1503-8 (2009)
  PUBMED    19835478
REFERENCE   2 (bases 1 to 1279)
            Show all sequences for reference 2
  AUTHORS   Vercauteren,J., Wensing,A.M.J., Van de Vijver,D.A.M.C., Albert,J.,
	    Balotta,C., Hamouda,O., Kuecherer,C., Struck,D., Schmit,J.-C.,
	    Asjo,B., Bruckova,M., Camacho,R., Clotet,B., Coughlan,S.,
	    Grossman,Z., Horban,A., Korn,K., Kostrikis,L.G., Nielsen,C.,
	    Paraskevis,D., Poljak,M., Puchhammer-Stoeckl,E., Riva,C., Ruiz,L.,
	    Salminen,M., Schuurman,R., Soennerborg,A., Stanekova,D.,
	    Stanojevic,M., Vandamme,A.-M. and Boucher,C.A.
  CONSRTM   SPREAD / EuropeHIVResistance
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) Rega Institute for Medical Research and
	    University Hospitals, Katholieke Universiteit Leuven, Leuven,
	    Belgium
FEATURES             Location/Qualifiers
     source	     1..1279
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="hUXqGko9zlsJVr6"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Netherlands"
		     /collection_date="2003"
		     /collected_by="C.A.B. Boucher, Professor MD, PhD;
		     A.M.J.Wensing, MD, PhD"
     gene	     <1..>1279
		     /gene="pol"
     CDS	     <1..>1279
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACW57090.1"
		     /db_xref="GI:259377669"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVKQYDQIXIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKVGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKBFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYIGSDLEIGQHRAKIEELREHLLRWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIMLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGXKALTEVV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIA"
     misc_feature    31..273
		     /gene="pol"
		     /note="Retropepsins, pepsin-like aspartate proteases;
		     Region: HIV_retropepsin_like; cd05482"
		     /db_xref="CDD:133149"
     misc_feature    order(73..75,79..81,85..87,136..144,250..252)
		     /gene="pol"
		     /note="inhibitor binding site; inhibition site"
		     /db_xref="CDD:133149"
     misc_feature    73..81
		     /gene="pol"
		     /note="catalytic motif; other site"
		     /db_xref="CDD:133149"
     misc_feature    73..75
		     /gene="pol"
		     /note="Catalytic residue; other site"
		     /db_xref="CDD:133149"
     misc_feature    order(136..150,154..168)
		     /gene="pol"
		     /note="Active site flap; active site"
		     /db_xref="CDD:133149"
     misc_feature    349..999
		     /gene="pol"
		     /note="RT_like: Reverse transcriptase (RT, RNA-dependent
		     DNA polymerase)_like family. An RT gene is usually
		     indicative of a mobile element such as a retrotransposon
		     or retrovirus. RTs occur in a variety of mobile elements,
		     including retrotransposons...; Region: RT_like; cl02808"
		     /db_xref="CDD:141703"
     misc_feature    457..999
		     /gene="pol"
		     /note="Reverse transcriptase (RNA-dependent DNA
		     polymerase); Region: RVT_1; pfam00078"
		     /db_xref="CDD:109146"
     misc_feature    order(625..642,748..753,844..846,850..855,985..990)
		     /gene="pol"
		     /note="active site"
		     /db_xref="CDD:73150"
     misc_feature    order(625..642,748..750,850..852)
		     /gene="pol"
		     /note="NTP binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    751..753
		     /gene="pol"
		     /note="nucleic acid binding site; other site"
		     /db_xref="CDD:73150"
     misc_feature    1009..>1161
		     /gene="pol"
		     /note="Reverse transcriptase thumb domain; Region:
		     RVT_thumb; pfam06817"
		     /db_xref="CDD:115473"
     misc_feature    <1..297
		     /gene="pol"
		     /note="protease"
     misc_feature    298..>1279
		     /gene="pol"
		     /note="reverse transcriptase"
BASE COUNT	501 a	 205 c	  272 g    297 t      4 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccctta gtcacaataa agataggagg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 cagatacyca tagagatttg cggacataaa gctataggta cagtgttaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgtacttt aaattttccc 
     301 attagtccta ttgacactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga ggaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaagatttc aaaagttggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagactttag agaacttaat 
     541 aaaagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaaracttca gaaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attaggtatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatttt agagcctttt agaaaacaaa atccagacat agttatatat 
     841 caatacatgg atgatttgta tataggatca gacttagaaa tagggcagca tagagcaaaa 
     901 atagaggaac tgagagaaca tctgttaagg tggggactta ccacaccaga caaaaaacat 
     961 cagaaagaac ctcccttcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctataa tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaagca attatgtaaa 
    1141 ctccttaggg gamccaaagc rctaacagaa gtagtaccac taacagaaga agcagagtta 
    1201 gaactggcag aaaacaggga gattctaaaa gaaccagtac atggggtgta ttatgaccca 
    1261 tcaaaagact taatagcag
//
last modified: Tue May 31 10:56 2022


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