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LOCUS	    GQ344957		    1293 bp    DNA     linear	VRL 09-AUG-2009
DEFINITION  HIV-1 isolate 06CM06ARC004 from Cameroon reverse transcriptase
	    (Pol) gene, partial cds
ACCESSION   GQ344957
VERSION     GQ344957.1 GI:255116546
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1293)
            Show all sequences for reference 1
  AUTHORS   Burda,S.T., Viswanath,R., Zhao,J., Kinge,T., Anyangwe,C.,
	    Tinyami,E.T., Haldar,B., Powell,R.L.R., Jarido,V., Hewlett,I.K. and
	    Nyambi,P.N.
  TITLE     HIV-1 reverse transcriptase drug-resistance mutations in
	    chronically infected individuals receiving or naive to HAART in
	    Cameroon.
  JOURNAL   J. Med. Virol.. 82(2); 187-96 (2010)
  PUBMED    20029816
REFERENCE   2 (bases 1 to 1293)
            Show all sequences for reference 2
  AUTHORS   Nyambi,P.N., Burda,S.T., Viswanath,R., Zhao,J., Kinge,T.,
	    Haldar,B., Powell,R.L.R., Jarido,V. and Hewlett,I.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2009) Pathology, New York University School of
	    Medicine, c/o VAMC 423 East 23rd Street, New York, NY 10010, USA
FEATURES             Location/Qualifiers
     source	     1..1293
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="06CM06ARC004"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cameroon"
		     /collection_date="13-Mar-2006"
		     /note="subtype: CRF02_AG"
     gene	     <1..>1293
		     /gene="Pol"
     CDS	     <1..>1293
		     /gene="Pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="ACU01314.1"
		     /db_xref="GI:255116547"
		     /translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKE
		     GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIF
		     QASMTKILEPFRTKNPEIVIYQYMDDLYVGSDLEIGQHRAKIEEXREHLLRWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKV
		     KQLCKLLRGAKALTEVVALTEEAELELAENXEILKEPVHGVYYDPAKDLVAEIQKQGQ
		     DQWTYQIYQEPFKNLKTGKYAKKRSAHTNDVRQLTEVVQKVALESIVIWGKXPKFRLP
		     IQKETWEAWWMEYWQATWIPEWEFVNTPPLVKLXYQLEK"
BASE COUNT	513 a	 210 c	  276 g    288 t      6 other
ORIGIN
       1 ccaattagtc ctattgaaac tgtaccagta aaattgaagc caggtatgga tggcccaaag 
      61 gttaaacaat ggccattgac agaagaaaaa ataaaggcgt taacagaaat ttgtacagat 
     121 atggaaaagg aaggaaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta 
     181 tttgccataa agaaaaaaga tagtactaaa tggagaaaat tagtagattt cagagaactc 
     241 aataaaagaa ctcaagactt ctgggaggtc caattaggaa tacctcatcc cgcgggatta 
     301 aaaaagaaaa aatcagtaac agtactagat gtaggggatg catatttttc agttccctta 
     361 gatgaagact ttagaaagta tactgcattc actataccta gtgtaaataa tgaaacaccg 
     421 gggattagat atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattt 
     481 caggctagca tgacaaaaat cttagagccc tttagaacaa aaaatccaga gatagtgatt 
     541 taccaatata tggatgattt atatgtaggg tcngatttag agatagggca acatagagca 
     601 aaaatagagg agttnagaga acatttactg agatggggat tcaccacacc agacaaaaaa 
     661 catcagaaag aacctccatt tctttggatg ggatatgaac tccatcctga caaatggaca 
     721 gtccagccta tacagctgcc agaaaaagac agctggactg tcaatgatat acagaaatta 
     781 gtgggaaaac taaattgggc aagtcagatt tatgcaggaa ttaaagtaaa acaactgtgt 
     841 aaactcctca ggggagccaa agcactgaca gaggtagtgg cactgactga ggaagcagaa 
     901 ttagaattgg cagaaaacag ngaaattcta aaagaacctg tacatggagt atattatgat 
     961 ccagcaaaag acctagtagc agaaatacag aaacaagggc aagaccaatg gacatatcaa 
    1021 atttatcaag agccatttaa aaatttaaaa acaggaaaat atgcaaaaaa gaggtctgcc 
    1081 cacaccaatg atgtaagaca gctaacagag gtagtgcaaa aggtggcttt agaaagtata 
    1141 gtaatatggg gaaagncccc taaatttaga ctacccatac aaaaagaaac atgggaggca 
    1201 tggtggatgg agtattggca ggctacctgg attcctgaat gggagtttgt caataccccc 
    1261 cctctagtaa aattanngta tcaattagag aaa
//
last modified: Tue May 31 10:56 2022


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