View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS GQ344957 1293 bp DNA linear VRL 09-AUG-2009
DEFINITION HIV-1 isolate 06CM06ARC004 from Cameroon reverse transcriptase
(Pol) gene, partial cds
ACCESSION GQ344957
VERSION GQ344957.1 GI:255116546
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1293)
Show all sequences for reference 1
AUTHORS Burda,S.T., Viswanath,R., Zhao,J., Kinge,T., Anyangwe,C.,
Tinyami,E.T., Haldar,B., Powell,R.L.R., Jarido,V., Hewlett,I.K. and
Nyambi,P.N.
TITLE HIV-1 reverse transcriptase drug-resistance mutations in
chronically infected individuals receiving or naive to HAART in
Cameroon.
JOURNAL J. Med. Virol.. 82(2); 187-96 (2010)
PUBMED 20029816
REFERENCE 2 (bases 1 to 1293)
Show all sequences for reference 2
AUTHORS Nyambi,P.N., Burda,S.T., Viswanath,R., Zhao,J., Kinge,T.,
Haldar,B., Powell,R.L.R., Jarido,V. and Hewlett,I.K.
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2009) Pathology, New York University School of
Medicine, c/o VAMC 423 East 23rd Street, New York, NY 10010, USA
FEATURES Location/Qualifiers
source 1..1293
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="06CM06ARC004"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cameroon"
/collection_date="13-Mar-2006"
/note="subtype: CRF02_AG"
gene <1..>1293
/gene="Pol"
CDS <1..>1293
/gene="Pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="ACU01314.1"
/db_xref="GI:255116547"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIF
QASMTKILEPFRTKNPEIVIYQYMDDLYVGSDLEIGQHRAKIEEXREHLLRWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKV
KQLCKLLRGAKALTEVVALTEEAELELAENXEILKEPVHGVYYDPAKDLVAEIQKQGQ
DQWTYQIYQEPFKNLKTGKYAKKRSAHTNDVRQLTEVVQKVALESIVIWGKXPKFRLP
IQKETWEAWWMEYWQATWIPEWEFVNTPPLVKLXYQLEK"
BASE COUNT 513 a 210 c 276 g 288 t 6 other
ORIGIN
1 ccaattagtc ctattgaaac tgtaccagta aaattgaagc caggtatgga tggcccaaag
61 gttaaacaat ggccattgac agaagaaaaa ataaaggcgt taacagaaat ttgtacagat
121 atggaaaagg aaggaaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta
181 tttgccataa agaaaaaaga tagtactaaa tggagaaaat tagtagattt cagagaactc
241 aataaaagaa ctcaagactt ctgggaggtc caattaggaa tacctcatcc cgcgggatta
301 aaaaagaaaa aatcagtaac agtactagat gtaggggatg catatttttc agttccctta
361 gatgaagact ttagaaagta tactgcattc actataccta gtgtaaataa tgaaacaccg
421 gggattagat atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattt
481 caggctagca tgacaaaaat cttagagccc tttagaacaa aaaatccaga gatagtgatt
541 taccaatata tggatgattt atatgtaggg tcngatttag agatagggca acatagagca
601 aaaatagagg agttnagaga acatttactg agatggggat tcaccacacc agacaaaaaa
661 catcagaaag aacctccatt tctttggatg ggatatgaac tccatcctga caaatggaca
721 gtccagccta tacagctgcc agaaaaagac agctggactg tcaatgatat acagaaatta
781 gtgggaaaac taaattgggc aagtcagatt tatgcaggaa ttaaagtaaa acaactgtgt
841 aaactcctca ggggagccaa agcactgaca gaggtagtgg cactgactga ggaagcagaa
901 ttagaattgg cagaaaacag ngaaattcta aaagaacctg tacatggagt atattatgat
961 ccagcaaaag acctagtagc agaaatacag aaacaagggc aagaccaatg gacatatcaa
1021 atttatcaag agccatttaa aaatttaaaa acaggaaaat atgcaaaaaa gaggtctgcc
1081 cacaccaatg atgtaagaca gctaacagag gtagtgcaaa aggtggcttt agaaagtata
1141 gtaatatggg gaaagncccc taaatttaga ctacccatac aaaaagaaac atgggaggca
1201 tggtggatgg agtattggca ggctacctgg attcctgaat gggagtttgt caataccccc
1261 cctctagtaa aattanngta tcaattagag aaa
//
last modified: Tue May 31 10:56 2022