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LOCUS GQ256490 427 bp RNA linear VRL 26-JUL-2009
DEFINITION HIV-1 clone 3.1-5.1 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION GQ256490
VERSION GQ256490.1 GI:254548416
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 427)
Show all sequences for reference 1
AUTHORS Brennan,T.P., Woods,J.O., Sedaghat,A.R., Siliciano,J.D.,
Siliciano,R.F. and Wilke,C.O.
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2009) Department of Medicine, The Johns Hopkins
University School of Medicine, 733 North Broadway BRB 872,
Baltimore, MD 21205, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Brennan,T.P., Woods,J.O., Sedaghat,A.R., Siliciano,J.D.,
Siliciano,R.F. and Wilke,C.O.
TITLE Analysis of human immunodeficiency virus type 1 viremia and
provirus in resting CD4+ T cells reveals a novel source of residual
viremia in patients on antiretroviral therapy
JOURNAL J. Virol. 83 (17), 8470-8481 (2009)
PUBMED 19535437
REFERENCE 3
Show all sequences for reference 3
AUTHORS Wang,Z., Gurule,E.E., Brennan,T.P., Gerold,J.M., Kwon,K.J.,
Hosmane,N.N., Kumar,M.R., Beg,S.A., Capoferri,A.A., Ray,S.C.,
Ho,Y.-C., Hill,A.L., Siliciano,J.D. and Siliciano,R.F.
TITLE Expanded cellular clones carrying replication-competent HIV-1
persist, wax, and wane.
JOURNAL Proc. Natl. Acad. Sci. U. S. A.. 115(11); E2575-E2584 (2018)
PUBMED 29483265
FEATURES Location/Qualifiers
source 1..427
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="182"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="3.1-5.1"
/country="USA: Johns Hopkins Hospital, Baltimore,
Maryland"
/collection_date="Jan-2006"
gene <1..>427
/gene="env"
CDS <1..>427
/gene="env"
/note="C2-V4 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACT67024.1"
/db_xref="GI:254548417"
/translation="QLKEPVEINCTRPNNNTRRSIHIGLGRRFYATRIIGDIRQAHCN
LSNIKWNNTLREIAKKLGEKYNKTIVFNGPSGGDPEIVMHTFNCGGEFFYCNATKLFN
STWNNSTWNNTNPGENVTITLPCRIKQIINMWQKTGKAMY"
BASE COUNT 180 a 61 c 83 g 103 t
ORIGIN
1 cagctgaagg aacctgtaga aattaattgt acaaggccca acaacaatac aagaaggagt
61 atacatatag gactagggag aagattttat gcaacaagaa taataggaga tataagacaa
121 gcacattgta accttagtaa tataaaatgg aataacactt taagagagat agctaaaaaa
181 ttaggagaaa agtataataa aaccatagtc tttaatggac cctcaggagg ggacccagaa
241 attgtaatgc acacttttaa ttgtggagga gaatttttct actgtaatgc aacaaaactg
301 tttaattcta cgtggaataa tagtacttgg aataatacta atcctgggga aaatgttacc
361 atcacactcc catgcaggat aaaacaaatt ataaacatgt ggcagaaaac aggaaaagca
421 atgtatg
//
last modified: Tue May 31 10:56 2022