HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    GQ252708		     459 bp    DNA     linear	VRL 22-JUL-2009
DEFINITION  HIV-1 isolate D03724B6 from Uganda gag protein (gag) gene, partial
	    cds
ACCESSION   GQ252708
VERSION     GQ252708.1 GI:254072049
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 459)
            Show all sequences for reference 1
  AUTHORS   Kiwanuka,N., Laeyendecker,O., Quinn,T.C., Wawer,M.J., Shepherd,J.,
	    Robb,M., Kigozi,G., Kagaayi,J., Serwadda,D., Makumbi,F.E.,
	    Reynolds,S.J. and Gray,R.H.
  TITLE     HIV-1 subtypes and differences in heterosexual HIV transmission
	    among HIV-discordant couples in Rakai, Uganda.
  JOURNAL   AIDS. 23(18); 2479-84 (2009)
  PUBMED    19841572
REFERENCE   2 (bases 1 to 459)
            Show all sequences for reference 2
  AUTHORS   Kiwanuka,N., Layendecker,O., Quinn,T.C., Wawer,M.J., Shepherd,J.,
	    Robb,M., Kigozi,G., Kagaayi,J., Serwadda,D., Makumbi,F.E.,
	    Reynolds,S.J. and Gray,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2009) School of Public Health, Makerere
	    University, Kampala, Uganda
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gray,R.R., Tatem,A.J., Lamers,S., Hou,W., Laeyendecker,O.,
	    Serwadda,D., Sewankambo,N., Gray,R.H., Wawer,M., Quinn,T.C.,
	    Goodenow,M.M. and Salemi,M.
  TITLE     Spatial phylodynamics of HIV-1 epidemic emergence in east Africa.
  JOURNAL   AIDS. 23(14); F9-F17 (2009)
  PUBMED    19644346
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Collinson-Streng,A.N., Redd,A.D., Sewankambo,N.K., Serwadda,D.,
	    Rezapour,M., Lamers,S.L., Gray,R.H., Wawer,M.J., Quinn,T.C. and
	    Laeyendecker,O.
  TITLE     Geographic HIV type 1 subtype distribution in Rakai district,
	    Uganda.
  JOURNAL   AIDS Res. Hum. Retroviruses. 25(10); 1045-8 (2009)
  PUBMED    19803713
FEATURES             Location/Qualifiers
     source	     1..459
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="D03724B6"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Uganda:Kibale-Rakai"
		     /collection_date="17-Sep-1997"
		     /note="subtype: D"
     gene	     <1..>459
		     /gene="gag"
     CDS	     <1..>459
		     /gene="gag"
		     /note="p24"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ACT64732.1"
		     /db_xref="GI:254072050"
		     /translation="LNAWVKVIEEKAFSPEVIPMFTALSEGATSYDLNTMLNTVGGHQ
		     AAMQMLKETINEEAAEWDRLHPVQAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTSN
		     PPIPVGEIYKRWIVLGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTL"
BASE COUNT	170 a	  80 c	  108 g    101 t
ORIGIN
       1 ttgaacgcat gggtaaaagt aatagaggag aaggctttta gtccagaagt aatacccatg 
      61 tttacagcat tatcagaagg agccacctct tatgatttaa atactatgct aaacacagtg 
     121 gggggacatc aagcagccat gcaaatgtta aaagagacca tcaatgagga agctgcagaa 
     181 tgggataggt tacatccagt gcaggcaggg cctattgcgc caggccaaat gagagaacca 
     241 aggggaagtg atatagcagg aactactagt acccttcagg aacaaatagg atggatgaca 
     301 agtaatccac ctatcccagt aggagaaatt tataaaagat ggatagtcct aggattaaat 
     361 aaaatagtaa gaatgtatag cccagtcagc attttggaca taagacaagg accaaaggaa 
     421 ccctttagag actatgtaga tcggttctat aaaactcta
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.