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LOCUS	    FR666671		    1583 bp    RNA     linear	VRL 20-JUL-2010
DEFINITION  HIV-1 M:A 07CD2657 partial gene for polyprotein, genomic RNA
ACCESSION   FR666671
VERSION     FR666671.1 GI:301016553
KEYWORDS    .
SOURCE	    HIV-1 M:A:07CD2657
  ORGANISM  HIV-1 M:A:07CD2657 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Djoko,C.F., Rimoin,A.W., Vidal,N., Tamoufe,U., Wolfe,N.D.,
	    Butel,C., Lebreton,M., Tshala,F.M., Kayembe,P.K., Muyembe,J.J.,
	    Edidi-Basepeo,S., Pike,B.L., Fair,J.N., Mbacham,W.F., Saylors,K.E.,
	    Mpoudi-Ngole,E., Delaporte,E., Grillo,M. and Peeters,M.
  TITLE     High HIV type 1 group M pol diversity and low rate of
	    antiretroviral resistance mutations among the uniformed services in
	    Kinshasa, Democratic Republic of the Congo.
  JOURNAL   AIDS Res. Hum. Retroviruses. 27(3); 323-9 (2011)
  PUBMED    20954909
REFERENCE   2 (bases 1 to 1583)
            Show all sequences for reference 2
  AUTHORS   Djoko,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2010) Djoko C.F., Laboratory, GVFI, Intendance
	    Round About, 7039, CAMEROON
FEATURES             Location/Qualifiers
     source	     1..1583
		     /organism="HIV-1 M:A:07CD2657"
		     /mol_type="genomic RNA"
		     /isolate="A_07CD2657"
		     /db_xref="taxon:864255"
		     /country="Democratic Republic of the Congo:Kinshasa"
		     /collection_date="2007"
		     /note="group:M"
     gene	     <173..>1583
		     /gene="gag-pol"
     CDS	     <173..>1583
		     /gene="gag-pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag-pol fusion polyprotein precursor"
		     /protein_id="CBV35852.1"
		     /db_xref="GI:301016554"
		     /translation="PQITLWQRPLVTVXVGGQLKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALXXICSEMEKEGKISKIGPENPYNTPVF
		     AIKKXDSTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPSIFQHSMTKILEPFRAKNPE
		     IVIYQYMDDLYVGSDLEIGQHRTKIDELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLIRGAKALTDVV
		     TLTEEAELELAENREILKDPVHGVYYDPSKDLVADIQKQGQDQWTYQIYQEPFKXLKT
		     GKYAKRRTAHTNDVKQLTEV"
     mat_peptide     173..469
		     /gene="gag-pol"
		     /product="protease"
     mat_peptide     470..>1583
		     /gene="gag-pol"
		     /product="reverse transcriptase"
BASE COUNT	594 a	 275 c	  338 g    355 t     21 other
ORIGIN
       1 aggctaattt tttagggaaa atttggcctt ccaacagagg gaggccaggg aattttcctc 
      61 agagcagacc ggagccatca gccccaccag cagagaactt tggaatgggg gaagagataa 
     121 cctcctctct gaaacaggag cagaacargg aaytgcctcc tccctcaatc tccctcaaat 
     181 cactctttgg caacgacccc ttgtcacagt aaragtaggg ggacagctaa aagaagctct 
     241 attagataca ggagcagatg atacrgtatt agargacata aatttrccag gaaaatggaa 
     301 accaaaaatg atagggggaa ttggaggttt tatcaaagta agacagtatg accagatact 
     361 tatagaaatt tgtgggaaaa aggctatagg tacagtatta gtaggaccta cacctgtcaa 
     421 cataattggg agaaatatgt tgactcagat tggttgtact ytaaattttc caattagtcc 
     481 tattgacacy gtaccagtaa aattaaarcc aggaatggat ggcccaaaag ttaaacaatg 
     541 gccattgaca gaagaaaaaa taaaagcatt aayagamatt tgcagtgaga tggaaaarga 
     601 aggaaaaatt tcaaaaattg gacctgagaa tccatacaat actccagtat ttgctataaa 
     661 gaaaarggac agcactaaat ggagaaaatt ggtagatttt agagarctca ataaaagaac 
     721 tcaagacttc tgggaaattc aattaggaat accgcatccg gcgggtttaa aaaagaaaaa 
     781 atcagtaaca gtactagatg taggggatgc atatttttca gttcccttag atgaaagctt 
     841 tagaaagtat actgcattca ccatacctag tataaacaat gagacaccag gagtcagata 
     901 ccagtacaat gtgcttccrc arggatggaa aggatcacca tcaatattcc agcatagcat 
     961 gacmaaaatc ttagagccct ttagagcaaa aaatccagag atagttatct atcaatacat 
    1021 ggatgattta tatgtaggat cagatttaga aatagggcag catagaacaa aaatagatga 
    1081 gttgagagct catctrttga gctggggatt cactacacca gacaaaaagc atcagaaaga 
    1141 acctccattt ctttggatgg gatatgaact ccatcctgac aaatggacag tccagcccat 
    1201 agtgctgcct gacaaagaca gctggactgt caatgatata cagaaattag tggggaaact 
    1261 aaattgggca agtcagattt atccagggat taaagtaaag caactgtgta gactcatcag 
    1321 gggagccaag gcactgacag atgtagtrac actgactgag gaagcagaat tagaattggc 
    1381 agagaacagg gagattctaa aagaccctgt acatggagtc tattatgatc catcaaaaga 
    1441 cttagtagca gacatacaga aacaaggaca agaccaatgg acatatcaaa tttatcaaga 
    1501 gccatttaaa amtctaaaga caggraaata tgcaaaaagg aggactgccc acactaatga 
    1561 tgtaaaacag ttaacagaag tag
//
last modified: Tue May 31 10:56 2022


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