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LOCUS FR666671 1583 bp RNA linear VRL 20-JUL-2010
DEFINITION HIV-1 M:A 07CD2657 partial gene for polyprotein, genomic RNA
ACCESSION FR666671
VERSION FR666671.1 GI:301016553
KEYWORDS .
SOURCE HIV-1 M:A:07CD2657
ORGANISM HIV-1 M:A:07CD2657 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Djoko,C.F., Rimoin,A.W., Vidal,N., Tamoufe,U., Wolfe,N.D.,
Butel,C., Lebreton,M., Tshala,F.M., Kayembe,P.K., Muyembe,J.J.,
Edidi-Basepeo,S., Pike,B.L., Fair,J.N., Mbacham,W.F., Saylors,K.E.,
Mpoudi-Ngole,E., Delaporte,E., Grillo,M. and Peeters,M.
TITLE High HIV type 1 group M pol diversity and low rate of
antiretroviral resistance mutations among the uniformed services in
Kinshasa, Democratic Republic of the Congo.
JOURNAL AIDS Res. Hum. Retroviruses. 27(3); 323-9 (2011)
PUBMED 20954909
REFERENCE 2 (bases 1 to 1583)
Show all sequences for reference 2
AUTHORS Djoko,C.F.
TITLE Direct Submission
JOURNAL Submitted (12-JUL-2010) Djoko C.F., Laboratory, GVFI, Intendance
Round About, 7039, CAMEROON
FEATURES Location/Qualifiers
source 1..1583
/organism="HIV-1 M:A:07CD2657"
/mol_type="genomic RNA"
/isolate="A_07CD2657"
/db_xref="taxon:864255"
/country="Democratic Republic of the Congo:Kinshasa"
/collection_date="2007"
/note="group:M"
gene <173..>1583
/gene="gag-pol"
CDS <173..>1583
/gene="gag-pol"
/codon_start="1"
/transl_table="1"
/product="gag-pol fusion polyprotein precursor"
/protein_id="CBV35852.1"
/db_xref="GI:301016554"
/translation="PQITLWQRPLVTVXVGGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALXXICSEMEKEGKISKIGPENPYNTPVF
AIKKXDSTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPSIFQHSMTKILEPFRAKNPE
IVIYQYMDDLYVGSDLEIGQHRTKIDELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLIRGAKALTDVV
TLTEEAELELAENREILKDPVHGVYYDPSKDLVADIQKQGQDQWTYQIYQEPFKXLKT
GKYAKRRTAHTNDVKQLTEV"
mat_peptide 173..469
/gene="gag-pol"
/product="protease"
mat_peptide 470..>1583
/gene="gag-pol"
/product="reverse transcriptase"
BASE COUNT 594 a 275 c 338 g 355 t 21 other
ORIGIN
1 aggctaattt tttagggaaa atttggcctt ccaacagagg gaggccaggg aattttcctc
61 agagcagacc ggagccatca gccccaccag cagagaactt tggaatgggg gaagagataa
121 cctcctctct gaaacaggag cagaacargg aaytgcctcc tccctcaatc tccctcaaat
181 cactctttgg caacgacccc ttgtcacagt aaragtaggg ggacagctaa aagaagctct
241 attagataca ggagcagatg atacrgtatt agargacata aatttrccag gaaaatggaa
301 accaaaaatg atagggggaa ttggaggttt tatcaaagta agacagtatg accagatact
361 tatagaaatt tgtgggaaaa aggctatagg tacagtatta gtaggaccta cacctgtcaa
421 cataattggg agaaatatgt tgactcagat tggttgtact ytaaattttc caattagtcc
481 tattgacacy gtaccagtaa aattaaarcc aggaatggat ggcccaaaag ttaaacaatg
541 gccattgaca gaagaaaaaa taaaagcatt aayagamatt tgcagtgaga tggaaaarga
601 aggaaaaatt tcaaaaattg gacctgagaa tccatacaat actccagtat ttgctataaa
661 gaaaarggac agcactaaat ggagaaaatt ggtagatttt agagarctca ataaaagaac
721 tcaagacttc tgggaaattc aattaggaat accgcatccg gcgggtttaa aaaagaaaaa
781 atcagtaaca gtactagatg taggggatgc atatttttca gttcccttag atgaaagctt
841 tagaaagtat actgcattca ccatacctag tataaacaat gagacaccag gagtcagata
901 ccagtacaat gtgcttccrc arggatggaa aggatcacca tcaatattcc agcatagcat
961 gacmaaaatc ttagagccct ttagagcaaa aaatccagag atagttatct atcaatacat
1021 ggatgattta tatgtaggat cagatttaga aatagggcag catagaacaa aaatagatga
1081 gttgagagct catctrttga gctggggatt cactacacca gacaaaaagc atcagaaaga
1141 acctccattt ctttggatgg gatatgaact ccatcctgac aaatggacag tccagcccat
1201 agtgctgcct gacaaagaca gctggactgt caatgatata cagaaattag tggggaaact
1261 aaattgggca agtcagattt atccagggat taaagtaaag caactgtgta gactcatcag
1321 gggagccaag gcactgacag atgtagtrac actgactgag gaagcagaat tagaattggc
1381 agagaacagg gagattctaa aagaccctgt acatggagtc tattatgatc catcaaaaga
1441 cttagtagca gacatacaga aacaaggaca agaccaatgg acatatcaaa tttatcaaga
1501 gccatttaaa amtctaaaga caggraaata tgcaaaaagg aggactgccc acactaatga
1561 tgtaaaacag ttaacagaag tag
//
last modified: Tue May 31 10:56 2022